WormBase Tree Display for Gene: WBGene00006607
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| WBGene00006607 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F57B10 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | tre-1 | |||||||
| Sequence_name | F57B10.7 | ||||||||
| Molecular_name | F57B10.7 | ||||||||
| F57B10.7.1 | |||||||||
| CE30545 | |||||||||
| Other_name | tag-36 | CGC_data_submission | |||||||
| tre1 | Accession_evidence | EMBL | AJ512337 | ||||||
| CELE_F57B10.7 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | tre-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tre | ||||||||
| Allele (30) | |||||||||
| Strain | WBStrain00031452 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00011029 | ||||||||
| 00011030 | |||||||||
| 00011031 | |||||||||
| 00011032 | |||||||||
| 00011033 | |||||||||
| 00011034 | |||||||||
| 00114451 | |||||||||
| 00114452 | |||||||||
| 00114453 | |||||||||
| Contained_in_operon | CEOP1336 | ||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00006610 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006611 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006608 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006609 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable alpha,alpha-trehalase activity. Predicted to be involved in trehalose catabolic process. Is an ortholog of human TREH (trehalase). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F57B10.7 | |||||||
| Corresponding_transcript | F57B10.7.1 | ||||||||
| Other_sequence (33) | |||||||||
| Associated_feature | WBsf643382 | ||||||||
| WBsf983954 | |||||||||
| WBsf217851 | |||||||||
| WBsf217852 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00116881 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00082620 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033011 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081097 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003842 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048823 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082434 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000431 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017089 | ||||||||
| Expr1032738 | |||||||||
| Expr1152579 | |||||||||
| Expr2017488 | |||||||||
| Expr2035627 | |||||||||
| Drives_construct | WBCnstr00034273 | ||||||||
| Construct_product | WBCnstr00034273 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (123) | |||||||||
| Interaction (20) | |||||||||
| Map_info | Map | I | Position | 1.21127 | Error | 0.000296 | |||
| Positive | Positive_clone | F57B10 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4736 | |||||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Locus name from allele ok327 of Knock out consortium [030204 ck1] | ||||||||
| Gene name created from parsing 'genotype' field from CGC strain information | CGC_data_submission | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
