WormBase Tree Display for Gene: WBGene00006607

WBGene00006607 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: F57B10
  Identity: Version: 1
    Name: CGC_name: tre-1
      Sequence_name: F57B10.7
      Molecular_name: F57B10.7
        F57B10.7.1
        CE30545
      Other_name: tag-36 CGC_data_submission
        tre1 Accession_evidence: EMBL AJ512337
        CELE_F57B10.7 Accession_evidence: NDB BX284601
      Public_name: tre-1
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:41 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tre
    Allele (30)
    Strain: WBStrain00031452
    RNASeq_FPKM (74)
    GO_annotation: 00011029
      00011030
      00011031
      00011032
      00011033
      00011034
      00114451
      00114452
      00114453
    Contained_in_operon: CEOP1336
    Ortholog: WBGene00066721 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00033575 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00159167 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00096064 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00192074 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00190731 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00127952 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00234006 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g9726 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g7343 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g8729 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g471 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g6735 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g7575 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g2934 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7852 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g28088 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g6084 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00016.g1055 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_06833.g20510 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_I.g2480 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold583.g4712 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00615.g13583 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_17707 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_002893 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05271 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g12338 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10331800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g1190 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00248543 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00261520 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00291135 Trichuris muris From_analysis: WormBase-Compara
      WBGene00299448 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000002408 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoInspector
            Panther
            SonicParanoid
      SGD:S000000205 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0034121 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0003748 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-070912-84 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:12266 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      MGI:1926230 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:61831 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00006610 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006611 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006608 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006609 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable alpha,alpha-trehalase activity. Predicted to be involved in trehalose catabolic process. Is an ortholog of human TREH (trehalase). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F57B10.7
    Corresponding_transcript: F57B10.7.1
    Other_sequence (33)
    Associated_feature: WBsf643382
      WBsf983954
      WBsf217851
      WBsf217852
  Experimental_info: RNAi_result: WBRNAi00116881 Inferred_automatically: RNAi_primary
      WBRNAi00082620 Inferred_automatically: RNAi_primary
      WBRNAi00033011 Inferred_automatically: RNAi_primary
      WBRNAi00081097 Inferred_automatically: RNAi_primary
      WBRNAi00003842 Inferred_automatically: RNAi_primary
      WBRNAi00048823 Inferred_automatically: RNAi_primary
      WBRNAi00082434 Inferred_automatically: RNAi_primary
      WBRNAi00000431 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017089
      Expr1032738
      Expr1152579
      Expr2017488
      Expr2035627
    Drives_construct: WBCnstr00034273
    Construct_product: WBCnstr00034273
    Microarray_results (20)
    Expression_cluster (123)
    Interaction (20)
  Map_info: Map: I Position: 1.21127 Error: 0.000296
    Positive: Positive_clone: F57B10 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4736
    Pseudo_map_position
  Reference (11)
  Remark: Locus name from allele ok327 of Knock out consortium [030204 ck1]
    Gene name created from parsing 'genotype' field from CGC strain information CGC_data_submission
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene