WormBase Tree Display for Gene: WBGene00006608

WBGene00006608 SMap: S_parent: Sequence: T05A12
  Identity: Version: 1
    Name: CGC_name: tre-2
      Sequence_name: T05A12.2
      Molecular_name: T05A12.2a
        T05A12.2a.1
        CE44739
        T05A12.2b
        CE04897
        T05A12.2c
        CE49303
        T05A12.2b.1
        T05A12.2c.1
      Other_name: tre2 Accession_evidence: EMBL AJ512334
        CELE_T05A12.2 Accession_evidence: NDB BX284604
      Public_name: tre-2
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:41 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tre
    Allele (87)
    Strain: WBStrain00003258
      WBStrain00031502
    RNASeq_FPKM (74)
    GO_annotation: 00082426
      00082427
      00082428
      00082429
      00082430
      00082431
      00092792
      00114454
      00114455
      00114456
    Contained_in_operon: CEOP4200
    Ortholog: WBGene00067094 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00028108 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00073535 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00155649 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00152841 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00104889 Pristionchus pacificus From_analysis: OMA
            WormBase-Compara
      WBGene00225831 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g8884 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g1221 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g7519 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g9297 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g11540 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g23858 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g7274 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g8318 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g14716 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g4171 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00015.g1023 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00834.g14474 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_14627.g24730 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_IV.g13642 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold624.g6314 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00879.g16398 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_06608 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_013773 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05454 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g3971 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40284400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00132525 Caenorhabditis japonica From_analysis: WormBase-Compara
      nigoni.pc_2016.07.11_112.g29160 Caenorhabditis nigoni From_analysis: WormBase-Compara
      WBGene00245870 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00265752 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00297355 Trichuris muris From_analysis: WormBase-Compara
      WBGene00301414 Trichuris muris From_analysis: WormBase-Compara
      WBGene00302821 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000002408 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoInspector
            Panther
            SonicParanoid
      SGD:S000000205 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0034121 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      FB:FBgn0003748 Drosophila melanogaster From_analysis: OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-070912-84 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      HGNC:12266 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      MGI:1926230 Mus musculus From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      RGD:61831 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            PhylomeDB
    Paralog: WBGene00006607 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006611 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006610 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006609 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Concise_description: tre-2 encodes one of four C. elegans trehalases; tre-2 is expressed throughout development. Paper_evidence: WBPaper00006140
            WBPaper00017649
          Curator_confirmed: WBPerson48
            WBPerson1843
          Date_last_updated: 20 Apr 2015 00:00:00
      Automated_description: Predicted to enable alpha,alpha-trehalase activity. Predicted to be involved in trehalose catabolic process. Is an ortholog of human TREH (trehalase). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T05A12.2a
      T05A12.2b
      T05A12.2c
    Corresponding_CDS_history: T05A12.2:wp213
    Corresponding_transcript: T05A12.2a.1
      T05A12.2b.1
      T05A12.2c.1
    Other_sequence (93)
    Associated_feature: WBsf667979
      WBsf667980
      WBsf996845
      WBsf996846
      WBsf1017629
  Experimental_info: RNAi_result: WBRNAi00018176 Inferred_automatically: RNAi_primary
      WBRNAi00052437 Inferred_automatically: RNAi_primary
      WBRNAi00035165 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram38
      Expr6610
      Expr1017561
      Expr1032739
      Expr1156058
      Expr2017489
      Expr2035628
    Drives_construct: WBCnstr00003733
      WBCnstr00034272
    Construct_product: WBCnstr00034272
    Microarray_results (21)
    Expression_cluster (121)
    Interaction (81)
  Map_info: Map: IV Position: 3.24775 Error: 0.000551
    Positive: Positive_clone: T05A12 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4450
        4478
        4737
    Pseudo_map_position
  Reference: WBPaper00006140
    WBPaper00017649
    WBPaper00038491
    WBPaper00046159
    WBPaper00055090
    WBPaper00061072
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene