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WormBase Tree Display for Gene: WBGene00006604

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Name Class

WBGene00006604SMapS_parentSequenceY47D3A
IdentityVersion1
NameCGC_nametra-1Person_evidenceWBPerson261
Sequence_nameY47D3A.6
Molecular_nameY47D3A.6a
Y47D3A.6a.1
CE52672
Y47D3A.6b
CE52664
Y47D3A.6b.1
Other_nameher-2
CELE_Y47D3A.6Accession_evidenceNDBBX284603
Public_nametra-1
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:41WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_info (12)
Disease_infoPotential_model (18)
Molecular_infoCorresponding_CDSY47D3A.6a
Y47D3A.6b
Corresponding_CDS_historyY47D3A.6:wp52
Y47D3A.6a:wp265
Y47D3A.6b:wp265
Corresponding_transcriptY47D3A.6a.1
Y47D3A.6b.1
Other_sequence (14)
Associated_feature (32)
Gene_product_bindsWBsf019099
WBsf034321
WBsf034334
WBsf047586
WBsf919544
Transcription_factorWBTranscriptionFactor000029
Experimental_infoRNAi_result (22)
Expr_pattern (22)
Drives_constructWBCnstr00000512
WBCnstr00000515
WBCnstr00001898
WBCnstr00002724
WBCnstr00002787
WBCnstr00011056
WBCnstr00011123
Construct_productWBCnstr00010051
WBCnstr00010427
WBCnstr00011123
WBCnstr00021700
AntibodyWBAntibody00000775
WBAntibody00000776
WBAntibody00000948
WBAntibody00001181
WBAntibody00001275
WBAntibody00002025
WBAntibody00002228
WBAntibody00002808
Microarray_results (38)
Expression_clusterWBPaper00032031:DConiospora_downregulated_OligoArray_24h
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037950:germline-precursors_embryo_enriched
WBPaper00037950:germline-precursors_embryo_SelectivelyEnriched
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
WBPaper00040221:DAF-12_target_ALF4
WBPaper00044426:rotenone_24h_downregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00044736:flat_dev_expression
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00045729:gld-2(RNAi)_downregulated
WBPaper00045974:NSM_enriched_DSN-treated_RNAseq
WBPaper00046509:htz-1(ok3099)_downregulated
WBPaper00048690:male-Z1-Z4_enriched
WBPaper00048988:neuron_expressed
WBPaper00049018:swsn-2.2(RNAi)_upregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053295:lin-22(icb38)_upregulated
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053321:PGCs_enriched_NuGen
WBPaper00053388:dauer_regulated_Cluster3
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00055334:DLC-1_interacting
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055648:germline_expressed
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056293:rpl-5(0)-rpl-33(0)_downregulated
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056826:SGP_biased
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057068:ints-4(RNAi)_downregulated_Cadmium
WBPaper00057288:Cold_upregulated_transcript
WBPaper00058691:sin-3(tm1276)_upregulated
WBPaper00058725:sftb-1(cer6)_upregulated
WBPaper00058725:sftb-1(cer39)_upregulated
WBPaper00059027:neuron-synapses_depleted
WBPaper00059174:MEG-3_interacting
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00059609:malt-1_ilc-17.1_nfki-1_upregulated
WBPaper00059824:rnp-6(dh1127)_regulated_OP50
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00060100:SiNP_upregulated_mRNA
WBPaper00060459:bcat-1(RNAi)_upregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00061340:AVH_parent
WBPaper00061340:Neuroblast_HSN_PHB
WBPaper00061340:Y
WBPaper00061340:Z1_Z4
WBPaper00061527:gpb-1_3783-C48A7.2_22459
WBPaper00061527:sol-1-jnk-1_18695
WBPaper00061527:tars-1-AFFX-r2-3026-5_at
WBPaper00061527:tub-2_4713-daf-2_5288
WBPaper00061902:camt-1(ok515)_regulated_RMG
WBPaper00062056:lin-15B(we23)_downregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00064494:postdauer_upregulated_AWA
WBPaper00065120:body-muscle-transcriptome
WBPaper00065158:25C_vs_15C_downregulated_AFD
WBPaper00065158:AFD_enriched
WBPaper00065835:Day11_vs_Day1_upregulated
WBPaper00065975:P-body_vs_oocyte_enriched
WBPaper00065975:P-body_vs_WholeAnimal_enriched
cgc4489_group_22
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00027111:rrf-3(pk1426)_upregulated
WBPaper00031003:hlh_1_enriched
WBPaper00031252:AIN-1_IP_enriched
WBPaper00031532:Larva_Pan_Neuronal_Enriched
WBPaper00031832:slr-2_regulated
WBPaper00034661:AgNPs_downregulated
WBPaper00034739:N2lessDR1350
WBPaper00035084:embryo_enriched_AIN-2_IP
WBPaper00035084:L1_enriched_AIN-2_IP
WBPaper00035084:L2_enriched_AIN-2_IP
WBPaper00035084:L3_enriched_AIN-2_IP
WBPaper00035084:L4_enriched_AIN-2_IP
WBPaper00035227:heat_shock_regulated
WBPaper00035905:FBF-1_Associated
WBPaper00037611:GLD-2-associated
WBPaper00038172:aak-2overexpression_up_regulated
WBPaper00040426:CYD-1_CDK-4_downregulated
WBPaper00040821:Au-NP_regulated
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_regulated_aging
WBPaper00040858:eQTL_regulated_reproductive
WBPaper00040963:TA100_down
WBPaper00040963:TA200_down
WBPaper00040963:TA300_down
WBPaper00041002:HF_11d_2.0mM_Up
WBPaper00041939:control_vs_UVC-EtBr-exposed_3h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_3h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_3h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00045263:0.1mM-paraquat_downregulated
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00045263:isp-1(qm150)_upregulated
WBPaper00045294:0.1uM_TBBP_downregulated
WBPaper00045294:50uM_DBAA_downregulated
WBPaper00046548:dafachronic-acid_downregulated
WBPaper00053236:Starvation_regulated_N2
[cgc5376]:let-60(G12V)-regulated_genes
Interaction (240)
WBProcessWBbiopr:00000123
Map_infoMapIIIPosition6.88967Error0.104832
Well_ordered
PositiveInside_rearreDf20
tDf1
tDp1
tDp2
Positive_cloneF56C2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Y47D3AInferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_data2_point87
4229
Multi_point (11)
Pos_neg_data5730
5739
5946
351
1599
8372
Landmark_gene
Reference (412)
PictureWBPicture0000013095
MethodGene