WormBase Tree Display for Gene: WBGene00006593
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| WBGene00006593 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | tol-1 | Person_evidence | WBPerson1122 | |||||
| Sequence_name | C07F11.1 | ||||||||
| Molecular_name | C07F11.1 | ||||||||
| C07F11.1.1 | |||||||||
| CE28818 | |||||||||
| Other_name | C07F11.a | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| C07F11.b | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_C07F11.1 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | tol-1 | ||||||||
| DB_info | Database | AceView | gene | 1A933 | |||||
| WormQTL | gene | WBGene00006593 | |||||||
| WormFlux | gene | WBGene00006593 | |||||||
| NDB | locus_tag | CELE_C07F11.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006593|UniProtKB=Q9N5Z3 | |||||||
| family | PTHR24373 | ||||||||
| NCBI | gene | 171635 | |||||||
| RefSeq | protein | NM_001025812.6 | |||||||
| TREEFAM | TREEFAM_ID | TF325595 | |||||||
| TrEMBL | UniProtAcc | Q9N5Z3 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N5Z3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tol | ||||||||
| Allele (303) | |||||||||
| Strain | WBStrain00007217 | ||||||||
| WBStrain00021957 | |||||||||
| WBStrain00021972 | |||||||||
| WBStrain00029108 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00095698 | ||||||||
| 00095699 | |||||||||
| 00095700 | |||||||||
| 00095701 | |||||||||
| 00095702 | |||||||||
| 00095703 | |||||||||
| 00095704 | |||||||||
| 00095705 | |||||||||
| 00105846 | |||||||||
| 00114408 | |||||||||
| Contained_in_operon | CEOP1008 | ||||||||
| Ortholog (48) | |||||||||
| Paralog | WBGene00003915 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00008977 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00011971 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020649 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022789 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | tol-1 encodes a predicted transmembrane protein that is the sole C. elegans Toll-like receptor (TLR); TOL-1 is required for proper embryonic development and for pathogen avoidance behavior, and is expressed primarily in the nervous system. | Paper_evidence | WBPaper00004692 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 28 Feb 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable signaling receptor activity. Involved in defense response to Gram-negative bacterium and embryo development. Predicted to be located in extracellular matrix and extracellular space. Expressed in neurons. Is an ortholog of several human genes including CHAD (chondroadherin); ELFN2 (extracellular leucine rich repeat and fibronectin type III domain containing 2); and TRIL (TLR4 interactor with leucine rich repeats). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C07F11.1 | |||||||
| Corresponding_CDS_history | C07F11.1b:wp115 | ||||||||
| Corresponding_transcript | C07F11.1.1 | ||||||||
| Other_sequence (20) | |||||||||
| Associated_feature (24) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00112556 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00063081 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082217 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004994 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040008 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028638 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116880 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1361 | ||||||||
| Expr12434 | |||||||||
| Expr15432 | |||||||||
| Expr1027970 | |||||||||
| Expr1032726 | |||||||||
| Expr1144085 | |||||||||
| Expr2017451 | |||||||||
| Expr2035590 | |||||||||
| Drives_construct | WBCnstr00010235 | ||||||||
| WBCnstr00021084 | |||||||||
| Construct_product | WBCnstr00010235 | ||||||||
| WBCnstr00042643 | |||||||||
| WBCnstr00042645 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (133) | |||||||||
| Interaction (23) | |||||||||
| WBProcess | WBbiopr:00000008 | ||||||||
| WBbiopr:00000039 | |||||||||
| Map_info | Map | I | Position | -19.0389 | Error | 0.00579 | |||
| Positive | Positive_clone | C07F11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| W05D2 | |||||||||
| Mapping_data | Multi_point | 4391 | |||||||
| 4732 | |||||||||
| 4872 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003925 | ||||||||
| WBPaper00004692 | |||||||||
| WBPaper00005709 | |||||||||
| WBPaper00006488 | |||||||||
| WBPaper00006512 | |||||||||
| WBPaper00019611 | |||||||||
| WBPaper00023386 | |||||||||
| WBPaper00024209 | |||||||||
| WBPaper00025180 | |||||||||
| WBPaper00025183 | |||||||||
| WBPaper00026131 | |||||||||
| WBPaper00026689 | |||||||||
| WBPaper00026948 | |||||||||
| WBPaper00027295 | |||||||||
| WBPaper00029071 | |||||||||
| WBPaper00030989 | |||||||||
| WBPaper00031161 | |||||||||
| WBPaper00032445 | |||||||||
| WBPaper00032891 | |||||||||
| WBPaper00037382 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00039409 | |||||||||
| WBPaper00041669 | |||||||||
| WBPaper00041897 | |||||||||
| WBPaper00042367 | |||||||||
| WBPaper00045112 | |||||||||
| WBPaper00046621 | |||||||||
| WBPaper00048436 | |||||||||
| WBPaper00049281 | |||||||||
| WBPaper00049748 | |||||||||
| WBPaper00049765 | |||||||||
| WBPaper00050250 | |||||||||
| WBPaper00052548 | |||||||||
| WBPaper00052593 | |||||||||
| WBPaper00053732 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00055976 | |||||||||
| WBPaper00060200 | |||||||||
| WBPaper00060906 | |||||||||
| WBPaper00062938 | |||||||||
| WBPaper00064105 | |||||||||
| WBPaper00064255 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00064805 | |||||||||
| WBPaper00065184 | |||||||||
| Remark | Sequence connection from [Pujol N, Ewbank JJ] based on AF348166 | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
