WormBase Tree Display for Gene: WBGene00006588
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| WBGene00006588 | SMap | S_parent | Sequence | C14F5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | tnt-3 | Person_evidence | WBPerson819 | |||||
| Sequence_name | C14F5.3 | ||||||||
| Molecular_name (23) | |||||||||
| Other_name | esp-1 | Paper_evidence | WBPaper00005370 | ||||||
| CELE_C14F5.3 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | tnt-3 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 04 Sep 2008 13:46:57 | WBPerson2970 | Name_change | Other_name | esp-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tnt | ||||||||
| Allele (155) | |||||||||
| Strain | WBStrain00031767 | ||||||||
| WBStrain00035660 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00003817 | ||||||||
| 00003818 | |||||||||
| 00003819 | |||||||||
| 00003820 | |||||||||
| 00114390 | |||||||||
| 00114391 | |||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00003495 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00006587 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006589 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | tnt-3 is orthologous to the human gene TROPONIN T (TNNT2; OMIM:191045), which when mutated leads to disease. | Curator_confirmed | WBPerson1823 | |||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable tropomyosin binding activity. Predicted to be involved in muscle contraction and sarcomere organization. Predicted to be part of troponin complex. Human ortholog(s) of this gene implicated in several diseases, including distal arthrogryposis type 2B2; intrinsic cardiomyopathy (multiple); and nemaline myopathy (multiple). Is an ortholog of human TNNT1 (troponin T1, slow skeletal type); TNNT2 (troponin T2, cardiac type); and TNNT3 (troponin T3, fast skeletal type). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (14) | ||||||||
| Molecular_info | Corresponding_CDS | C14F5.3a | |||||||
| C14F5.3b | |||||||||
| C14F5.3c | |||||||||
| C14F5.3d | |||||||||
| C14F5.3e | |||||||||
| C14F5.3f | |||||||||
| Corresponding_CDS_history | C14F5.3a:wp128 | ||||||||
| C14F5.3a:wp271 | |||||||||
| C14F5.3b:wp128 | |||||||||
| C14F5.3b:wp271 | |||||||||
| C14F5.3c:wp128 | |||||||||
| C14F5.3d:wp271 | |||||||||
| Corresponding_transcript (11) | |||||||||
| Other_sequence (32) | |||||||||
| Associated_feature | WBsf654174 | ||||||||
| WBsf655679 | |||||||||
| WBsf670786 | |||||||||
| WBsf718634 | |||||||||
| WBsf718635 | |||||||||
| WBsf1005991 | |||||||||
| WBsf1005992 | |||||||||
| WBsf1023332 | |||||||||
| WBsf237626 | |||||||||
| WBsf237627 | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr1023347 | ||||||||
| Expr1032721 | |||||||||
| Expr1144619 | |||||||||
| Expr2017436 | |||||||||
| Expr2035575 | |||||||||
| Drives_construct | WBCnstr00034285 | ||||||||
| Construct_product | WBCnstr00034285 | ||||||||
| Microarray_results (38) | |||||||||
| Expression_cluster (176) | |||||||||
| Interaction (32) | |||||||||
| Map_info | Map | X | Position | -0.881659 | Error | 0.023935 | |||
| Positive | Positive_clone | C14F5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4730 | |||||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Sequence connection from [Bucher EA]. 02/06/12 krb. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
