WormBase Tree Display for Gene: WBGene00006589
expand all nodes | collapse all nodes | view schema
| WBGene00006589 | SMap | S_parent | Sequence | T08B1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | tnt-4 | Person_evidence | WBPerson819 | |||||
| Sequence_name | T08B1.2 | ||||||||
| Molecular_name | T08B1.2a | ||||||||
| T08B1.2a.1 | |||||||||
| CE30830 | |||||||||
| T08B1.2c | |||||||||
| CE48024 | |||||||||
| T08B1.2c.1 | |||||||||
| Other_name | CELE_T08B1.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | tnt-4 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tnt | ||||||||
| Allele (75) | |||||||||
| Strain | WBStrain00035564 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00024068 | ||||||||
| 00024069 | |||||||||
| 00024070 | |||||||||
| 00024071 | |||||||||
| 00024072 | |||||||||
| 00024073 | |||||||||
| 00024074 | |||||||||
| 00032866 | |||||||||
| 00114392 | |||||||||
| 00114393 | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00003495 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00006587 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006588 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable tropomyosin binding activity. Involved in muscle contraction; nematode larval development; and pharyngeal gland morphogenesis. Predicted to be part of troponin complex. Human ortholog(s) of this gene implicated in several diseases, including distal arthrogryposis type 2B2; intrinsic cardiomyopathy (multiple); and nemaline myopathy (multiple). Is an ortholog of human TNNT1 (troponin T1, slow skeletal type); TNNT2 (troponin T2, cardiac type); and TNNT3 (troponin T3, fast skeletal type). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (14) | ||||||||
| Molecular_info | Corresponding_CDS | T08B1.2a | |||||||
| T08B1.2c | |||||||||
| Corresponding_CDS_history | T08B1.2b:wp249 | ||||||||
| Corresponding_transcript | T08B1.2a.1 | ||||||||
| T08B1.2c.1 | |||||||||
| Other_sequence (99) | |||||||||
| Associated_feature | WBsf652493 | ||||||||
| WBsf999428 | |||||||||
| WBsf1019244 | |||||||||
| WBsf233375 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00065931 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00018424 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052832 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065927 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065920 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035336 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1013115 | ||||||||
| Expr1032722 | |||||||||
| Expr1156434 | |||||||||
| Expr2017437 | |||||||||
| Expr2035576 | |||||||||
| Drives_construct | WBCnstr00008079 | ||||||||
| WBCnstr00016245 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (235) | |||||||||
| Interaction (43) | |||||||||
| Map_info | Map | V | Position | -16.5126 | Error | 0.015794 | |||
| Positive | Positive_clone | T08B1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4731 | |||||||
| 4861 | |||||||||
| 4830 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00023933 | ||||||||
| WBPaper00027020 | |||||||||
| WBPaper00028374 | |||||||||
| WBPaper00029192 | |||||||||
| WBPaper00035956 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060779 | |||||||||
| WBPaper00062388 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Sequence connection from [Bucher EA]. 02/06/12 krb. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
