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WormBase Tree Display for Gene: WBGene00006587

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Name Class

WBGene00006587SMapS_parentSequenceF53A9
IdentityVersion1
NameCGC_nametnt-2Person_evidenceWBPerson819
Sequence_nameF53A9.10
Molecular_nameF53A9.10
F53A9.10.1
CE34313
Other_nameCELE_F53A9.10Accession_evidenceNDBBX284606
Public_nametnt-2
DB_infoDatabaseAceViewgeneXJ340
WormQTLgeneWBGene00006587
WormFluxgeneWBGene00006587
NDBlocus_tagCELE_F53A9.10
PanthergeneCAEEL|WormBase=WBGene00006587|UniProtKB=Q7Z072
familyPTHR11521
NCBIgene181119
RefSeqproteinNM_001029532.4
TrEMBLUniProtAccQ7Z072
UniProt_GCRPUniProtAccQ7Z072
OMIMgene191041
191045
600692
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:41WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtnt
Allele (38)
StrainWBStrain00035798
RNASeq_FPKM (74)
GO_annotation00082952
00082953
00082954
00082955
00114388
00114389
Ortholog (54)
ParalogWBGene00003495Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00006589Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006588Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable tropomyosin binding activity. Predicted to be involved in muscle contraction and sarcomere organization. Predicted to be part of troponin complex. Human ortholog(s) of this gene implicated in several diseases, including distal arthrogryposis type 2B2; intrinsic cardiomyopathy (multiple); and nemaline myopathy (multiple). Is an ortholog of human TNNT1 (troponin T1, slow skeletal type); TNNT2 (troponin T2, cardiac type); and TNNT3 (troponin T3, fast skeletal type).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_model (14)
Molecular_infoCorresponding_CDSF53A9.10
Corresponding_CDS_historyF53A9.10:wp102
F53A9.10b:wp275
Corresponding_transcriptF53A9.10.1
Other_sequenceBE669098.1
FG979390.1
FG979914.1
FG976078.1
FG973676.1
FK806147.1
BI773142.1
FC812769.1
CK726208.1
GE637827.1
FG979726.1
CK854916.1
CK850727.1
JI471041.1
FG974819.1
FG973730.1
AS12313
HC03074
EY462378.1
PP00213
AA618661.1
FG981053.1
FG972824.1
WBC01490_1
AM744429.1
FF681441.1
BE346064.1
MHC11041_1
Acan_isotig10053
HBC05803_1
PPC01519_2
AI096103.1
FG975251.1
FG976911.1
JI172962.1
CBC00907_1
Tcol_isotig07503
FG976952.1
AW980271.1
PPC08255_1
CK850786.1
CK855241.1
AI511571.1
Oden_isotig19533
EX561584.1
XI01220
FG980659.1
FK806756.1
FG975078.1
MI03939
ES410244.1
FG978519.1
FG974118.1
FG979190.1
AS00115
FG971745.1
FC816260.1
HC02894
FG973216.1
AM744782.1
ALC00510_1
FG978349.1
EX541390.1
BUC01520_1
EX012655.1
FF680219.1
AI511524.1
FG974057.1
AM744654.1
AW308541.1
EX549987.1
FG975446.1
FG976528.1
JI465311.1
EX562334.1
SS01332
EX012087.1
MI00977
FG973027.1
OVC00332_1
FG972159.1
FG974009.1
AW980166.1
FG979862.1
Tcol_isotig12244
OVC04518_2
TDC00761_1
FG978664.1
FG978002.1
FG979159.1
AW980297.1
HSC00706_1
SRC00656_2
MP00161
BXC02601_1
MI03731
FG979622.1
FF679739.1
HBC00147_2
FF679099.1
FG977297.1
GE638444.1
CR12082
BF400548.1
FG971161.1
FG975908.1
EW744498.1
MJ03757
FG978307.1
GPC00417_1
CK726428.1
BF400321.1
FG975997.1
EX549347.1
FG973696.1
FG973473.1
FG971285.1
FG973492.1
MIC00268_1
AS02582
FG971983.1
HG09207
FF678556.1
FG973061.1
XIC01615_1
GRC03346_1
DIC00519_1
FG970804.1
FG977685.1
HGC00009_1
CK726320.1
FG974939.1
AI130311.1
OVC04108_1
FG971340.1
FG974294.1
FG973723.1
FG979779.1
MI04081
CK854712.1
EX547979.1
FG975771.1
HBC21581_1
FG979317.1
FG978144.1
CK854945.1
FG972914.1
FF681268.1
PP00454
FF678507.1
MI01968
FG973464.1
FK809246.1
FG977413.1
EX911202.1
CK850496.1
FG979600.1
GO239698.1
MI00811
Acan_isotig06926
TDC02616_1
FG975552.1
CRC05446_1
GW412604.1
FF679521.1
FK802169.1
FG974814.1
FG974977.1
FG977623.1
CK726086.1
FG977252.1
CK854701.1
WBC01426_1
CK855018.1
MIC00400_1
AI381152.1
NB07281
FG978839.1
AW682839.1
MAC00758_1
CR01674
FG977652.1
GO250135.1
MA02804
GE638698.1
MAC00832_1
FG976285.1
FG979614.1
AA934338.1
HBC02817_1
AM744303.1
FG978762.1
MI00784
MCC00921_1
FG977394.1
FG975821.1
CB038689.1
HBC09274_1
FG976996.1
FG975415.1
FG976029.1
FG980744.1
Acan_isotig20555
TCC01256_1
FG980095.1
EX012337.1
FG975052.1
BE720893.1
FF680952.1
BE238882.1
FG980689.1
ES413965.1
AA675959.1
Dviv_isotig24113
FG974464.1
FK803200.1
AA917211.1
FC809439.1
HC03320
Tcol_isotig12245
AS11334
FE917829.1
CK726376.1
FG977322.1
AM744503.1
Tcir_isotig09887
FG975573.1
FG979723.1
HBC14611_1
BE669117.1
FG974551.1
ES742205.1
GW410130.1
EX549483.1
FG970851.1
AI130071.1
EX549741.1
AI363515.1
JG463645.1
FG971706.1
FG980271.1
MA00497
FK807182.1
CK854938.1
MI02162
CRC06057_1
FG971557.1
SSC02741_1
FG974124.1
AI130181.1
EX013113.1
AM744436.1
Acan_isotig09551
MH01096
FK804343.1
FC818440.1
FG981172.1
GO239621.1
AW980168.1
FG979257.1
Tcol_isotig13873
ASC03188_1
FG972535.1
FG978069.1
CK855498.1
GO240563.1
AS11426
EX551833.1
FG974463.1
FK807546.1
OVC00099_1
FG973904.1
AM744821.1
FG971464.1
FG971797.1
CSC01062_1
AI130052.1
FG980498.1
FG974056.1
FC810813.1
EX913173.1
BU586152.1
DI00836
ACC08976_1
FG979130.1
EX011181.1
ASC02294_1
CK726308.1
EX555461.1
AW682842.1
FG978751.1
BE225453.1
GO240313.1
CK855462.1
FG972763.1
HC01932
CK850138.1
FG970911.1
JK314824.1
FG978700.1
LSC01261_1
CR07089
GO239614.1
FG978876.1
AS10475
MIC01187_1
FG980160.1
FE917260.1
FG583467.1
FG980315.1
FG971107.1
Oden_isotig19560
FG975544.1
ES411102.1
GR12579
FG972406.1
CK855261.1
FG980322.1
FG978047.1
WBC01290_1
BE225496.1
MI03559
CK726425.1
ES740398.1
FG979252.1
ACC12259_1
BMC08041_1
CK855198.1
FG976893.1
FG980197.1
CK726265.1
Hbac_isotig00268
FK805045.1
MH02908
PSC01410
FG973462.1
FF679616.1
FG974351.1
FD516765.1
FG977396.1
WBC01882_1
FG976934.1
FG978641.1
CK850719.1
FG977045.1
FG972660.1
FF681049.1
FG975837.1
BE761004.1
BE760968.1
MH04690
Name_isotig02554
FG971055.1
FG971082.1
ES409998.1
FK804222.1
FG979906.1
FG975811.1
EX015003.1
FG978891.1
FG977275.1
GO239338.1
EX536804.1
MH04691
FG977810.1
MI01088
FF679379.1
CK854948.1
FG980877.1
FG981033.1
CJC01777_1
FC543536.1
HC02599
HBC00147_1
AA294019.1
MH02541
FG975264.1
AM744430.1
FF680546.1
FG979530.1
HBC11619_1
FG976038.1
GR12660
FG975881.1
EX913783.1
AM744827.1
AS15128
FF681189.1
AA618774.1
FG971158.1
TX01067
FG976401.1
FG971296.1
FG979015.1
JO468345.1
FK805916.1
FG974415.1
CGC01202_1
FK804234.1
FF680928.1
CK726401.1
Hbac_isotig01496
CK855413.1
CK854864.1
AS12722
GE638869.1
FK802490.1
BE491751.1
FG977189.1
ES412416.1
EX539207.1
MJ04517
EX556652.1
FG974854.1
FG977302.1
FG973507.1
FG971653.1
CD455835.1
FG972808.1
FG980638.1
FC817768.1
FG971709.1
CK855189.1
HBC05230_1
FG972107.1
FG979863.1
FG976174.1
FG979610.1
AA934260.1
FG976560.1
AA618737.1
GE638504.1
EX008880.1
CD202993.1
AW980149.1
FG976653.1
FG980390.1
MJC02856_1
HO243969.1
ASC03419_1
FG979544.1
FG980112.1
AM744023.1
OVC06189_1
EX563801.1
HBC02524_1
AS11501
Dviv_isotig23258
AI130378.1
FG978436.1
BE761003.1
Tcir_isotig06625
FG972276.1
FG980172.1
EX560741.1
MI01979
FG975240.1
FK808085.1
AM744820.1
BE346010.1
HBC06352_1
FG973551.1
MC00492
HBC25615_1
MI01060
MPC01030_1
FC550054.1
CK726299.1
FG971699.1
MI02352
AI096063.1
FG977505.1
FG979857.1
AW980181.1
FE916091.1
CK855109.1
FG971240.1
JO471776.1
FF678127.1
HBC25432_1
FK806036.1
FE918709.1
FG973501.1
MC01143
EU676186.1
FG980075.1
FC814724.1
HCC00591_1
EX013842.1
FG975683.1
SRC08131_1
FG980557.1
CK854848.1
FG974178.1
OVC04518_1
FG976475.1
FG974571.1
FG979988.1
AW980294.1
HCC00833_1
CK726111.1
BE636498.1
FG973936.1
BMC08041_2
FG973991.1
FF679805.1
HS01428
TCC00435_1
CK725585.1
SR00945
FG974024.1
FF679667.1
FG971490.1
FC818160.1
HG03516
GQ202200.1
OVC04023_1
OOC00324_1
OVC06177_1
CK855121.1
BE239236.1
FG980092.1
FG977374.1
FG977160.1
FK803338.1
CK850049.1
FG978383.1
FG979977.1
BE346091.1
FG972358.1
ASC29084_1
FG980601.1
GE638166.1
NBC04664_1
CK725700.1
ACC20056_1
FG971013.1
FG973134.1
FG979400.1
PPC01519_1
CK850669.1
AE03999
FG972534.1
FF679497.1
AI111307.1
MP01136
FG975394.1
AI130630.1
NBC04071_1
FG979970.1
TX00361
CK850501.1
RS07624
FG978331.1
HBC02597_1
AS14478
FG973181.1
CK855079.1
FG974466.1
AS12542
CK854985.1
AI096097.1
GE639474.1
FG978356.1
FG977828.1
BMC00075_1
ES742479.1
FG980207.1
BE720883.1
Dviv_isotig10674
RSC00682_1
EX011846.1
FF681617.1
FG971133.1
AA620279.1
FG979251.1
BE636485.1
FG979792.1
CK855483.1
OCC00027_1
Tcir_isotig11286
WBC01499_1
FG976471.1
Tcir_isotig11926
FG974482.1
CK850700.1
EX549640.1
AI444912.1
FC812156.1
AYC02254_1
FG973349.1
HBC06640_1
CK726406.1
FK807195.1
FF681030.1
FG974998.1
FG976414.1
FG979571.1
AM744214.1
FG976667.1
JI171118.1
BF154343.1
AW980254.1
HBC07917_1
AW980223.1
MHC00309_1
FG974017.1
AW980183.1
EX550765.1
EX008633.1
FG975838.1
CRC01908_1
FG974073.1
FG980264.1
Associated_featureWBsf654230
WBsf655689
WBsf655690
WBsf1006224
WBsf1023453
WBsf237702
WBsf237703
WBsf237704
Experimental_infoRNAi_result (17)
Expr_patternChronogram1633
Expr6144
Expr1022341
Expr1032720
Expr1151870
Expr2017435
Expr2035574
Drives_constructWBCnstr00003316
WBCnstr00034286
Construct_productWBCnstr00034286
Microarray_results (30)
Expression_cluster (229)
Interaction (65)
Map_infoMapXPosition0.293773Error0.032461
PositivePositive_cloneF53A9Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4729
Pseudo_map_position
ReferenceWBPaper00027020
WBPaper00027740
WBPaper00028374
WBPaper00035956
WBPaper00038491
WBPaper00055090
WBPaper00057383
RemarkSequence connection from [Bucher EA]. 02/06/12 krb.
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene