WormBase Tree Display for Gene: WBGene00006515
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| WBGene00006515 | SMap | S_parent | Sequence | C05D11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | txdc-9 | Person_evidence | WBPerson95 | |||||
| Sequence_name | C05D11.3 | ||||||||
| Molecular_name | C05D11.3 | ||||||||
| C05D11.3.1 | |||||||||
| CE01133 | |||||||||
| Other_name | tag-170 | Person_evidence | WBPerson201 | ||||||
| CELE_C05D11.3 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | txdc-9 | ||||||||
| DB_info | Database | AceView | gene | 3H521 | |||||
| WormQTL | gene | WBGene00006515 | |||||||
| WormFlux | gene | WBGene00006515 | |||||||
| NDB | locus_tag | CELE_C05D11.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006515|UniProtKB=Q11183 | |||||||
| family | PTHR21148 | ||||||||
| NCBI | gene | 182257 | |||||||
| RefSeq | protein | NM_066009.5 | |||||||
| SwissProt | UniProtAcc | Q11183 | |||||||
| TREEFAM | TREEFAM_ID | TF313442 | |||||||
| UniProt_GCRP | UniProtAcc | Q11183 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 05 Oct 2005 17:51:41 | WBPerson2970 | Event | Acquires_merge | WBGene00015482 | ||||
| Name_change | Sequence_name | C05D11.3 | |||||||
| 3 | 28 Jan 2015 11:26:55 | WBPerson2970 | Name_change | CGC_name | txdc-9 | ||||
| Acquires_merge | WBGene00015482 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | txdc | ||||||||
| Allele (13) | |||||||||
| Strain | WBStrain00001400 | ||||||||
| WBStrain00035869 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00057390 | ||||||||
| 00057391 | |||||||||
| 00057392 | |||||||||
| 00057393 | |||||||||
| 00057394 | |||||||||
| 00057395 | |||||||||
| 00057396 | |||||||||
| 00057397 | |||||||||
| 00057398 | |||||||||
| Contained_in_operon | CEOP3376 | ||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00003142 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | txdc-9 encodes a thioredoxin domain-containing protein orthologous to human TXNDC9 and ENSG00000145268; in one-cell embryos, txdc-9 is required for normal nuclear-centrosome rotation, male pronuclear migration, cytokinesis, and mitotic spindles, and for normally long astral microtubules; in early embryos, txdc-9 is also required for normally rapid microtubule elongation; txdc-9 is expressed in larval and adult neurons and pharynx, and in vulva, with its strongest transcription in adults; like its mammalian ortholog, TXDC-9 is both nuclear and cytoplasmic. | Paper_evidence | WBPaper00004403 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00006395 | |||||||||
| WBPaper00006406 | |||||||||
| WBPaper00006525 | |||||||||
| WBPaper00024497 | |||||||||
| WBPaper00025054 | |||||||||
| WBPaper00026660 | |||||||||
| WBPaper00031006 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 15 Jan 2015 00:00:00 | ||||||||
| Automated_description | Involved in microtubule cytoskeleton organization. Located in cytoplasm and nucleus. Expressed in nervous system; pharynx; and vulva. Is an ortholog of human TXNDC9 (thioredoxin domain containing 9). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C05D11.3 | |||||||
| Corresponding_transcript | C05D11.3.1 | ||||||||
| Other_sequence (50) | |||||||||
| Associated_feature | WBsf645266 | ||||||||
| WBsf645267 | |||||||||
| WBsf659071 | |||||||||
| WBsf659072 | |||||||||
| WBsf225101 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00002290 | ||||||||
| WBCnstr00011002 | |||||||||
| WBCnstr00037890 | |||||||||
| Construct_product | WBCnstr00037890 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (118) | |||||||||
| Interaction (90) | |||||||||
| Map_info | Map | III | Position | -1.28012 | Error | 0.001456 | |||
| Positive | Positive_clone | C05D11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5643 | |||||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
