WormBase Tree Display for Gene: WBGene00006467
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WBGene00006467 | SMap | S_parent | Sequence | C01B7 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 4 | |||||||
Name | CGC_name | magu-2 | Person_evidence | WBPerson260 | |||||
Sequence_name | C01B7.4 | ||||||||
Molecular_name | C01B7.4a | ||||||||
C01B7.4a.1 | |||||||||
CE52786 | |||||||||
C01B7.4b | |||||||||
CE06728 | |||||||||
C01B7.4b.1 | |||||||||
Other_name | tag-117 | Person_evidence | WBPerson51134 | ||||||
WBPerson21950 | |||||||||
CELE_C01B7.4 | Accession_evidence | NDB | BX284605 | ||||||
Public_name | magu-2 | ||||||||
DB_info | Database | AceView | gene | 5J272 | |||||
WormQTL | gene | WBGene00006467 | |||||||
WormFlux | gene | WBGene00006467 | |||||||
NDB | locus_tag | CELE_C01B7.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006467|UniProtKB=A0A3B1DQX2 | |||||||
family | PTHR23122 | ||||||||
NCBI | gene | 3565703 | |||||||
RefSeq | protein | NM_001368460.3 | |||||||
NM_001392569.1 | |||||||||
TrEMBL | UniProtAcc | A0A3B1DQX2 | |||||||
Q17549 | |||||||||
UniProt_GCRP | UniProtAcc | A0A3B1DQX2 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 07 Feb 2012 16:30:56 | WBPerson2970 | Name_change | CGC_name | magu-2 | ||||
3 | 17 Sep 2018 14:44:56 | WBPerson4025 | Event | Acquires_merge | WBGene00015276 | ||||
4 | 06 Sep 2021 12:29:06 | WBPerson1983 | Name_change | Other_name | tag-117 | ||||
Acquires_merge | WBGene00015276 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | magu | ||||||||
Allele (111) | |||||||||
Strain | WBStrain00001351 | ||||||||
WBStrain00031792 | |||||||||
WBStrain00035753 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (15) | |||||||||
Ortholog (38) | |||||||||
Paralog | WBGene00002991 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00016841 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00021914 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | magu-2 encodes a protein with similarity to the MAGUK (membrane-associated guanylate kinase) family of proteins; loss of magu-2 activity in large-scale RNAi screens can result in embryonic lethality with low, reproducible chromosome segregation defects; magu-2 exhibits genetic interactions with sem-5 and glp-1. | Paper_evidence | WBPaper00025054 | |||||
WBPaper00031036 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 06 Jan 2011 00:00:00 | ||||||||
Automated_description | Predicted to be involved in several processes, including establishment or maintenance of cell polarity; morphogenesis of an epithelial sheet; and protein localization to plasma membrane. Predicted to be located in adherens junction and plasma membrane. Expressed in head; hypodermis; and pharyngeal muscle cell. Is an ortholog of human PALS1 (protein associated with LIN7 1, MAGUK p55 family member). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C01B7.4a | |||||||
C01B7.4b | |||||||||
Corresponding_CDS_history | C01B7.4:wp267 | ||||||||
Corresponding_transcript (2) | |||||||||
Other_sequence (25) | |||||||||
Associated_feature | WBsf652873 | ||||||||
WBsf717246 | |||||||||
WBsf718362 | |||||||||
WBsf718363 | |||||||||
WBsf1000758 | |||||||||
WBsf1000759 | |||||||||
WBsf1000760 | |||||||||
WBsf1000761 | |||||||||
WBsf1020096 | |||||||||
WBsf1020097 | |||||||||
Experimental_info | RNAi_result | WBRNAi00028272 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00067794 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00077325 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00039280 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00009904 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00067982 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00009903 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00103157 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00028271 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00039281 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (11) | |||||||||
Drives_construct | WBCnstr00002244 | ||||||||
WBCnstr00028966 | |||||||||
WBCnstr00041995 | |||||||||
Construct_product (2) | |||||||||
Regulate_expr_cluster | WBPaper00062554:MAGU-2_interacting | ||||||||
Microarray_results (36) | |||||||||
Expression_cluster (237) | |||||||||
Interaction (65) | |||||||||
Map_info | Map | V | Position | 1.61461 | Error | 0.004441 | |||
Positive | Positive_clone | C01B7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4356 | |||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00031333 | ||||||||
WBPaper00035956 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00051918 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00058545 | |||||||||
WBPaper00059621 | |||||||||
WBPaper00062554 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Moved tag-117 from magu-1 to magu-2 where it belongs, seems like a very old (2013) misassignment. | |||||||||
Method | Gene |