WormBase Tree Display for Gene: WBGene00021914
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| WBGene00021914 | SMap | S_parent | Sequence | Y55B1BR | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | magu-1 | Person_evidence | WBPerson260 | |||||
| Sequence_name | Y55B1BR.4 | ||||||||
| Molecular_name | Y55B1BR.4 | ||||||||
| Y55B1BR.4.1 | |||||||||
| CE29125 | |||||||||
| Other_name | CELE_Y55B1BR.4 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | magu-1 | ||||||||
| DB_info | Database | AceView | gene | 3B88 | |||||
| 3B80 | |||||||||
| WormQTL | gene | WBGene00021914 | |||||||
| WormFlux | gene | WBGene00021914 | |||||||
| NDB | locus_tag | CELE_Y55B1BR.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021914|UniProtKB=Q95XW5 | |||||||
| family | PTHR23122 | ||||||||
| NCBI | gene | 190302 | |||||||
| RefSeq | protein | NM_064800.4 | |||||||
| TrEMBL | UniProtAcc | Q95XW5 | |||||||
| UniProt_GCRP | UniProtAcc | Q95XW5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 07 Feb 2012 16:30:56 | WBPerson2970 | Name_change | CGC_name | magu-1 | ||||
| Other_name | tag-117 | ||||||||
| 3 | 06 Sep 2021 12:27:39 | WBPerson1983 | Name_change | Other_name | |||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | magu | ||||||||
| Allele (146) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00089375 | ||||||||
| 00089376 | |||||||||
| 00089377 | |||||||||
| 00089378 | |||||||||
| 00089379 | |||||||||
| 00089380 | |||||||||
| 00089381 | |||||||||
| 00089382 | |||||||||
| 00089383 | |||||||||
| Ortholog (43) | |||||||||
| Paralog | WBGene00002991 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006467 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00016841 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be located in cell-cell junction and plasma membrane. Expressed in arcade cell; intestine; and marginal cell. Is an ortholog of human MPP7 (MAGUK p55 scaffold protein 7). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y55B1BR.4 | |||||||
| Corresponding_transcript | Y55B1BR.4.1 | ||||||||
| Other_sequence (27) | |||||||||
| Associated_feature | WBsf991067 | ||||||||
| WBsf991068 | |||||||||
| WBsf1014074 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00037511 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00021014 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057510 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11293 | ||||||||
| Expr1023721 | |||||||||
| Expr1039629 | |||||||||
| Expr1160943 | |||||||||
| Expr2013352 | |||||||||
| Expr2031584 | |||||||||
| Drives_construct | WBCnstr00018743 | ||||||||
| WBCnstr00037821 | |||||||||
| Construct_product | WBCnstr00037821 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (64) | |||||||||
| Interaction (96) | |||||||||
| Map_info | Map | III | Position | -26.8441 | |||||
| Positive | Positive_clone | Y55B1BR | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032233 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Removed tag-117 as an other name as this was causing confusuon as the literature suggests it should be associated with magu-2 and not magu-1. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
