WormBase Tree Display for Gene: WBGene00021914
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WBGene00021914 | SMap | S_parent | Sequence | Y55B1BR | |||
---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||
Name | CGC_name | magu-1 | Person_evidence | WBPerson260 | |||
Sequence_name | Y55B1BR.4 | ||||||
Molecular_name | Y55B1BR.4 | ||||||
Y55B1BR.4.1 | |||||||
CE29125 | |||||||
Other_name | CELE_Y55B1BR.4 | Accession_evidence | NDB | BX284603 | |||
Public_name | magu-1 | ||||||
DB_info | Database | AceView | gene | 3B88 | |||
3B80 | |||||||
WormQTL | gene | WBGene00021914 | |||||
WormFlux | gene | WBGene00021914 | |||||
NDB | locus_tag | CELE_Y55B1BR.4 | |||||
Panther | gene | CAEEL|WormBase=WBGene00021914|UniProtKB=Q95XW5 | |||||
family | PTHR23122 | ||||||
NCBI | gene | 190302 | |||||
RefSeq | protein | NM_064800.4 | |||||
TrEMBL | UniProtAcc | Q95XW5 | |||||
UniProt_GCRP | UniProtAcc | Q95XW5 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (3) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | magu | ||||||
Allele (146) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00089375 | ||||||
00089376 | |||||||
00089377 | |||||||
00089378 | |||||||
00089379 | |||||||
00089380 | |||||||
00089381 | |||||||
00089382 | |||||||
00089383 | |||||||
Ortholog (43) | |||||||
Paralog | WBGene00002991 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00006467 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00016841 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
Structured_description | Automated_description | Predicted to be located in cell-cell junction and plasma membrane. Expressed in arcade cell; intestine; and marginal cell. Is an ortholog of human MPP7 (MAGUK p55 scaffold protein 7). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y55B1BR.4 | |||||
Corresponding_transcript | Y55B1BR.4.1 | ||||||
Other_sequence (27) | |||||||
Associated_feature | WBsf991067 | ||||||
WBsf991068 | |||||||
WBsf1014074 | |||||||
Experimental_info | RNAi_result | WBRNAi00037511 | Inferred_automatically | RNAi_primary | |||
WBRNAi00021014 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00057510 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr11293 | ||||||
Expr1023721 | |||||||
Expr1039629 | |||||||
Expr1160943 | |||||||
Expr2013352 | |||||||
Expr2031584 | |||||||
Drives_construct | WBCnstr00018743 | ||||||
WBCnstr00037821 | |||||||
Construct_product | WBCnstr00037821 | ||||||
Microarray_results (22) | |||||||
Expression_cluster (64) | |||||||
Interaction (96) | |||||||
Map_info | Map | III | Position | -26.8441 | |||
Positive | Positive_clone | Y55B1BR | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00032233 | ||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Removed tag-117 as an other name as this was causing confusuon as the literature suggests it should be associated with magu-2 and not magu-1. | Curator_confirmed | WBPerson1983 | |||||
Method | Gene |