WormBase Tree Display for Gene: WBGene00006467
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| WBGene00006467 | SMap | S_parent | Sequence | C01B7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | magu-2 | Person_evidence | WBPerson260 | |||||
| Sequence_name | C01B7.4 | ||||||||
| Molecular_name | C01B7.4a | ||||||||
| C01B7.4a.1 | |||||||||
| CE52786 | |||||||||
| C01B7.4b | |||||||||
| CE06728 | |||||||||
| C01B7.4b.1 | |||||||||
| Other_name | tag-117 | Person_evidence | WBPerson51134 | ||||||
| WBPerson21950 | |||||||||
| CELE_C01B7.4 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | magu-2 | ||||||||
| DB_info | Database | AceView | gene | 5J272 | |||||
| WormQTL | gene | WBGene00006467 | |||||||
| WormFlux | gene | WBGene00006467 | |||||||
| NDB | locus_tag | CELE_C01B7.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006467|UniProtKB=A0A3B1DQX2 | |||||||
| family | PTHR23122 | ||||||||
| NCBI | gene | 3565703 | |||||||
| RefSeq | protein | NM_001368460.3 | |||||||
| NM_001392569.1 | |||||||||
| TrEMBL | UniProtAcc | A0A3B1DQX2 | |||||||
| Q17549 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A3B1DQX2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 07 Feb 2012 16:30:56 | WBPerson2970 | Name_change | CGC_name | magu-2 | ||||
| 3 | 17 Sep 2018 14:44:56 | WBPerson4025 | Event | Acquires_merge | WBGene00015276 | ||||
| 4 | 06 Sep 2021 12:29:06 | WBPerson1983 | Name_change | Other_name | tag-117 | ||||
| Acquires_merge | WBGene00015276 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | magu | ||||||||
| Allele | WBVar00092328 | Inferred_automatically | From strain object: RB1088 | ||||||
| WBVar02158026 | |||||||||
| WBVar02158025 | |||||||||
| WBVar01033147 | |||||||||
| WBVar01033148 | |||||||||
| WBVar01033149 | |||||||||
| WBVar01033150 | |||||||||
| WBVar01033151 | |||||||||
| WBVar01033152 | |||||||||
| WBVar01033153 | |||||||||
| WBVar01033154 | |||||||||
| WBVar01033155 | |||||||||
| WBVar01033156 | |||||||||
| WBVar01033157 | |||||||||
| WBVar01033158 | |||||||||
| WBVar01033159 | |||||||||
| WBVar01033160 | |||||||||
| WBVar01033161 | |||||||||
| WBVar01033162 | |||||||||
| WBVar01033163 | |||||||||
| WBVar01033164 | |||||||||
| WBVar01033165 | |||||||||
| WBVar01499903 | |||||||||
| WBVar01033166 | |||||||||
| WBVar01033167 | |||||||||
| WBVar01033168 | |||||||||
| WBVar01033169 | |||||||||
| WBVar01033170 | |||||||||
| WBVar01033171 | |||||||||
| WBVar01033172 | |||||||||
| WBVar01033173 | |||||||||
| WBVar01033174 | |||||||||
| WBVar01033175 | |||||||||
| WBVar01033176 | |||||||||
| WBVar01033177 | |||||||||
| WBVar01033178 | |||||||||
| WBVar01033179 | |||||||||
| WBVar01033180 | |||||||||
| WBVar01033181 | |||||||||
| WBVar01033182 | |||||||||
| WBVar01033183 | |||||||||
| WBVar01033184 | |||||||||
| WBVar01033185 | |||||||||
| WBVar01033186 | |||||||||
| WBVar01033187 | |||||||||
| WBVar01033188 | |||||||||
| WBVar01033189 | |||||||||
| WBVar01033190 | |||||||||
| WBVar01033191 | |||||||||
| WBVar01033192 | |||||||||
| WBVar01033193 | |||||||||
| WBVar01033194 | |||||||||
| WBVar01033195 | |||||||||
| WBVar00263377 | |||||||||
| WBVar01033196 | |||||||||
| WBVar01033197 | |||||||||
| WBVar01033198 | |||||||||
| WBVar01033199 | |||||||||
| WBVar01033200 | |||||||||
| WBVar01033201 | |||||||||
| WBVar01033202 | |||||||||
| WBVar01033203 | |||||||||
| WBVar01500129 | |||||||||
| WBVar00254739 | |||||||||
| WBVar00254740 | |||||||||
| WBVar02152228 | |||||||||
| WBVar01741646 | |||||||||
| WBVar01741647 | |||||||||
| WBVar01741648 | |||||||||
| WBVar00236418 | |||||||||
| WBVar01741649 | |||||||||
| WBVar01499419 | |||||||||
| WBVar01499420 | |||||||||
| WBVar01499056 | |||||||||
| WBVar00465373 | |||||||||
| WBVar00465374 | |||||||||
| WBVar00465375 | |||||||||
| WBVar00465376 | |||||||||
| WBVar00465377 | |||||||||
| WBVar00465378 | |||||||||
| WBVar00465379 | |||||||||
| WBVar00465380 | |||||||||
| WBVar02147778 | |||||||||
| WBVar00465381 | |||||||||
| WBVar00213489 | |||||||||
| WBVar00465382 | |||||||||
| WBVar00465383 | |||||||||
| WBVar00465384 | |||||||||
| WBVar00465385 | |||||||||
| WBVar00465386 | |||||||||
| WBVar00465387 | |||||||||
| WBVar00465388 | |||||||||
| WBVar00465389 | |||||||||
| WBVar00259026 | |||||||||
| WBVar00465390 | |||||||||
| WBVar00465391 | |||||||||
| WBVar00465392 | |||||||||
| WBVar00465393 | |||||||||
| WBVar00465394 | |||||||||
| WBVar00465395 | |||||||||
| WBVar01863132 | |||||||||
| WBVar02024049 | |||||||||
| WBVar02136781 | |||||||||
| WBVar02136782 | |||||||||
| WBVar02136783 | |||||||||
| WBVar02136784 | |||||||||
| WBVar02136785 | |||||||||
| WBVar01499316 | |||||||||
| WBVar01940753 | |||||||||
| WBVar00145625 | |||||||||
| WBVar01974465 | |||||||||
| Strain | WBStrain00001351 | ||||||||
| WBStrain00031792 | |||||||||
| WBStrain00035753 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00002991 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00016841 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00021914 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | magu-2 encodes a protein with similarity to the MAGUK (membrane-associated guanylate kinase) family of proteins; loss of magu-2 activity in large-scale RNAi screens can result in embryonic lethality with low, reproducible chromosome segregation defects; magu-2 exhibits genetic interactions with sem-5 and glp-1. | Paper_evidence | WBPaper00025054 | |||||
| WBPaper00031036 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 06 Jan 2011 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in several processes, including establishment or maintenance of cell polarity; morphogenesis of an epithelial sheet; and protein localization to plasma membrane. Predicted to be located in adherens junction and plasma membrane. Expressed in head; hypodermis; and pharyngeal muscle cell. Is an ortholog of human PALS1 (protein associated with LIN7 1, MAGUK p55 family member). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C01B7.4a | |||||||
| C01B7.4b | |||||||||
| Corresponding_CDS_history | C01B7.4:wp267 | ||||||||
| Corresponding_transcript | C01B7.4a.1 | ||||||||
| C01B7.4b.1 | |||||||||
| Other_sequence (25) | |||||||||
| Associated_feature | WBsf652873 | ||||||||
| WBsf717246 | |||||||||
| WBsf718362 | |||||||||
| WBsf718363 | |||||||||
| WBsf1000758 | |||||||||
| WBsf1000759 | |||||||||
| WBsf1000760 | |||||||||
| WBsf1000761 | |||||||||
| WBsf1020096 | |||||||||
| WBsf1020097 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00028272 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00067794 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00077325 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039280 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009904 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00067982 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009903 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103157 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028271 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039281 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00002244 | ||||||||
| WBCnstr00028966 | |||||||||
| WBCnstr00041995 | |||||||||
| Construct_product | WBCnstr00028966 | ||||||||
| WBCnstr00041995 | |||||||||
| Regulate_expr_cluster | WBPaper00062554:MAGU-2_interacting | ||||||||
| Microarray_results (36) | |||||||||
| Expression_cluster (237) | |||||||||
| Interaction (65) | |||||||||
| Map_info | Map | V | Position | 1.61461 | Error | 0.004441 | |||
| Positive | Positive_clone | C01B7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4356 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031333 | ||||||||
| WBPaper00035956 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00051918 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058545 | |||||||||
| WBPaper00059621 | |||||||||
| WBPaper00062554 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Moved tag-117 from magu-1 to magu-2 where it belongs, seems like a very old (2013) misassignment. | |||||||||
| Method | Gene |
