WormBase Tree Display for Gene: WBGene00006410
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| WBGene00006410 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZK470 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | nck-1 | Person_evidence | WBPerson103 | |||||
| Sequence_name | ZK470.5 | ||||||||
| Molecular_name | ZK470.5a | ||||||||
| ZK470.5a.1 | |||||||||
| CE31270 | |||||||||
| ZK470.5b | |||||||||
| CE53627 | |||||||||
| ZK470.5b.1 | |||||||||
| Other_name | tag-22 | Person_evidence | WBPerson201 | ||||||
| CELE_ZK470.5 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | nck-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 24 Aug 2005 11:18:38 | WBPerson2970 | Name_change | CGC_name | nck-1 | ||||
| Other_name | tag-22 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nck | ||||||||
| Allele (104) | |||||||||
| Strain | WBStrain00002409 | ||||||||
| WBStrain00002332 | |||||||||
| WBStrain00031573 | |||||||||
| WBStrain00035589 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00087952 | ||||||||
| 00087953 | |||||||||
| 00087954 | |||||||||
| 00087955 | |||||||||
| 00087956 | |||||||||
| 00087957 | |||||||||
| 00087958 | |||||||||
| 00087959 | |||||||||
| 00087960 | |||||||||
| Ortholog (44) | |||||||||
| Paralog | WBGene00004774 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | nck-1 encodes an SH2/SH3 domain-containing protein orthologous to the human NCK adaptor proteins that link tyrosine kinase signaling to actin cytoskeleton reorganization; in C. elegans, nck-1 activity is required for excretory canal migration and full axon migration in mechanosensory neurons; a nck-1::gfp promoter fusion is expressed in the excretory cell and ventral cord motorneurons. | Paper_evidence | WBPaper00032514 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 21 Aug 2009 00:00:00 | ||||||||
| Automated_description | Predicted to enable receptor tyrosine kinase binding activity and signaling adaptor activity. Predicted to be involved in cell migration and signal transduction. Located in cytoplasm and nucleus. Expressed in several structures, including egg-laying apparatus; gonad; hypodermis; neuroblasts; and neurons. Is an ortholog of human NCK1 (NCK adaptor protein 1) and NCK2 (NCK adaptor protein 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK470.5a | |||||||
| ZK470.5b | |||||||||
| Corresponding_CDS_history | ZK470.5b:wp272 | ||||||||
| Corresponding_transcript | ZK470.5a.1 | ||||||||
| ZK470.5b.1 | |||||||||
| Other_sequence (15) | |||||||||
| Associated_feature (19) | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern (18) | |||||||||
| Drives_construct | WBCnstr00002061 | ||||||||
| WBCnstr00003001 | |||||||||
| WBCnstr00004496 | |||||||||
| WBCnstr00013363 | |||||||||
| WBCnstr00013801 | |||||||||
| WBCnstr00013802 | |||||||||
| WBCnstr00013803 | |||||||||
| WBCnstr00014491 | |||||||||
| WBCnstr00034367 | |||||||||
| Construct_product | WBCnstr00013802 | ||||||||
| WBCnstr00013803 | |||||||||
| WBCnstr00014490 | |||||||||
| WBCnstr00014491 | |||||||||
| WBCnstr00014494 | |||||||||
| WBCnstr00021621 | |||||||||
| WBCnstr00034367 | |||||||||
| Antibody | WBAntibody00002579 | ||||||||
| WBAntibody00003056 | |||||||||
| Microarray_results (31) | |||||||||
| Expression_cluster (130) | |||||||||
| Interaction (107) | |||||||||
| Map_info | Map | X | Position | -8.1368 | Error | 0.089595 | |||
| Positive | Positive_clone | ZK470 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4949 | |||||||
| 5017 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (21) | |||||||||
| Remark | Gene name created from parsing 'genotype' field from CGC strain information | CGC_data_submission | |||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
