WormBase Tree Display for Gene: WBGene00006251
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| WBGene00006251 | SMap | S_parent | Sequence | C42D4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | str-220 | Person_evidence | WBPerson42 | |||||
| Sequence_name | C42D4.9 | ||||||||
| Molecular_name | C42D4.9 | ||||||||
| C42D4.9.1 | |||||||||
| CE24842 | |||||||||
| Other_name | CELE_C42D4.9 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | str-220 | ||||||||
| DB_info | Database | AceView | gene | 4H932 | |||||
| WormQTL | gene | WBGene00006251 | |||||||
| WormFlux | gene | WBGene00006251 | |||||||
| NDB | locus_tag | CELE_C42D4.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006251|UniProtKB=Q18568 | |||||||
| family | PTHR22943 | ||||||||
| NCBI | gene | 192031 | |||||||
| RefSeq | protein | NM_068728.1 | |||||||
| TrEMBL | UniProtAcc | Q18568 | |||||||
| UniProt_GCRP | UniProtAcc | Q18568 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | str | ||||||||
| Allele (21) | |||||||||
| Strain | WBStrain00033079 | ||||||||
| WBStrain00033122 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00061679 | ||||||||
| 00061680 | |||||||||
| 00061681 | |||||||||
| 00061682 | |||||||||
| 00061683 | |||||||||
| Ortholog (21) | |||||||||
| Paralog (268) | |||||||||
| Structured_description | Concise_description | str-220 encodes a seven transmembrane chemoreceptor; microarray analyses indicate that str-220 is expressed at higher levels in the AWB olfactory neurons than the AFD thermosensory neurons; anatomical expression studies confirm expression in the AWB neurons; expression of str-220 in AWB is regulated, in part, by the KIN-29 Ser/Thr kinase. | Paper_evidence | WBPaper00005098 | |||||
| WBPaper00024671 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 07 Jun 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable G protein-coupled olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and olfactory behavior. Predicted to be located in membrane. Expressed in AWBL and AWBR. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C42D4.9 | |||||||
| Corresponding_transcript | C42D4.9.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00011875 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00042360 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11099 | ||||||||
| Expr1028568 | |||||||||
| Expr1146347 | |||||||||
| Expr2017033 | |||||||||
| Drives_construct | WBCnstr00018495 | ||||||||
| WBCnstr00034429 | |||||||||
| Construct_product (2) | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster | WBPaper00032528:L3_depleted | ||||||||
| WBPaper00037950:A-class-motor-neurons_L2-larva_expressed | |||||||||
| WBPaper00037950:all-neurons_L1-larva_expressed | |||||||||
| WBPaper00037950:all-neurons_L2-larva_expressed | |||||||||
| WBPaper00037950:AVA-neuron_L1-larva_expressed | |||||||||
| WBPaper00037950:bodywall-muscle_L1-larva_expressed | |||||||||
| WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed | |||||||||
| WBPaper00037950:coelomocytes_L1-larva_expressed | |||||||||
| WBPaper00037950:coelomocytes_L2-larva_expressed | |||||||||
| WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed | |||||||||
| WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed | |||||||||
| WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed | |||||||||
| WBPaper00040221:DAF-12_target_ALF4 | |||||||||
| WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray | |||||||||
| WBPaper00048690:male-Z1-Z4_enriched | |||||||||
| WBPaper00050015:ifg-1(RNAi)_upregulated | |||||||||
| WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C | |||||||||
| WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C | |||||||||
| WBPaper00053888:drh-3(rrr2)_downregulated | |||||||||
| WBPaper00055334:DLC-1_interacting | |||||||||
| WBPaper00055354:eat-2(ad1116)_downregulated | |||||||||
| WBPaper00061340:Excretory_gland | |||||||||
| WBPaper00061527:srj-42-srw-113 | |||||||||
| WBPaper00062103:neuron_enriched | |||||||||
| WBPaper00024671:AFD_AWB_vs_unsorted_upregulated | |||||||||
| WBPaper00024671:AFD_vs_AWB_downregulated | |||||||||
| WBPaper00026929:Resveratrol_regulated_daf-16 | |||||||||
| WBPaper00036123:Atrazine_regulated | |||||||||
| WBPaper00041939:control_vs_UVC-exposed_24h | |||||||||
| WBPaper00048989:eat-2(ad465)_rapamycin_upregulated | |||||||||
| Interaction (126) | |||||||||
| Map_info | Map | IV | Position | 3.29139 | Error | 5.3e-05 | |||
| Positive | Positive_clone | C42D4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005098 | ||||||||
| WBPaper00024671 | |||||||||
| WBPaper00027292 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
