WormBase Tree Display for Gene: WBGene00006061

WBGene00006061 SMap: S_parent: Sequence: F30A10
  Identity: Version: 1
    Name: CGC_name: stl-1 Person_evidence: WBPerson247
      Sequence_name: F30A10.5
      Molecular_name: F30A10.5a
        F30A10.5a.1
        CE47010
        F30A10.5b
        F30A10.5b.1
      Other_name: CELE_F30A10.5 Accession_evidence: NDB BX284601
      Public_name: stl-1
    DB_info: Database: AceView gene 1K62
        WormQTL gene WBGene00006061
        WormFlux gene WBGene00006061
        NDB locus_tag CELE_F30A10.5
        Panther gene CAEEL|WormBase=WBGene00006061|UniProtKB=H2FLJ1
          family PTHR43327
        NCBI gene 172777
        RefSeq protein NM_001264177.4
            NM_001264176.4
        SwissProt UniProtAcc H2FLJ1
        UniProt_GCRP UniProtAcc H2FLJ1
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:39 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: stl
    Allele (17)
    Legacy_information: [Barnes TM] stl for STomatin-Like. Very close ortholog of a human stomatin-like protein. Predicted gene F30A10.5
    Strain: WBStrain00003182
    RNASeq_FPKM (74)
    GO_annotation: 00021329
      00021330
      00021331
      00021332
      00021333
      00021334
      00113934
    Ortholog: WBGene00042595 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00164111 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00142765 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00085832 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00124674 Caenorhabditis japonica From_analysis: OMA
            WormBase-Compara
      WBGene00096037 Pristionchus pacificus From_analysis: OMA
            WormBase-Compara
      WBGene00223966 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g9514 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g11654 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g19120 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g20982 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g4811 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g9804 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g8314 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g11680 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g1386 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g5134 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g660 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00397.g10288 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_09043.g21849 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_13857.g24418 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-stl-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold161.g602 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00089.g3935 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_11556 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_000468 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11713 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g2170 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10071300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g1818 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00238466 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00262300 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00292137 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0034936 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1139 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:14559 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1913842 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1308285 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00003166 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006063 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006064 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006065 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006066 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006067 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006068 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006741 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006761 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in mitochondrion organization. Located in mitochondrion. Expressed in head neurons and pharynx. Is an ortholog of human STOML2 (stomatin like 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F30A10.5a
      F30A10.5b
    Corresponding_CDS_history: F30A10.5:wp90
      F30A10.5:wp229
    Corresponding_transcript: F30A10.5a.1
      F30A10.5b.1
    Other_sequence (75)
    Associated_feature: WBsf649477
      WBsf664758
      WBsf981078
  Experimental_info: RNAi_result (15)
    Expr_pattern: Chronogram1982
      Expr11475
      Expr1016775
      Expr1032536
      Expr1149856
      Expr2016966
      Expr2035114
    Drives_construct: WBCnstr00003658
      WBCnstr00034565
    Construct_product: WBCnstr00018700
      WBCnstr00018701
      WBCnstr00034565
    Microarray_results (21)
    Expression_cluster (140)
    Interaction (65)
  Map_info: Map: I Position: 3.77056 Error: 0.000852
    Positive: Positive_clone: F30A10 Author_evidence: (genomic sequence,
          Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4890
        4707
    Pseudo_map_position
  Reference: WBPaper00006465
    WBPaper00030154
    WBPaper00037777
    WBPaper00038491
    WBPaper00043115
    WBPaper00043145
    WBPaper00043532
    WBPaper00044657
    WBPaper00055090
    WBPaper00064339
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene