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WormBase Tree Display for Gene: WBGene00006053

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Name Class

WBGene00006053SMapS_parentSequenceT28H11
IdentityVersion1
NameCGC_namessq-4Person_evidenceWBPerson680
Sequence_nameT28H11.1
Molecular_nameT28H11.1
T28H11.1.1
CE30698
Other_nameCELE_T28H11.1Accession_evidenceNDBBX284604
Public_namessq-4
DB_infoDatabaseAceViewgene4F781
WormQTLgeneWBGene00006053
WormFluxgeneWBGene00006053
NDBlocus_tagCELE_T28H11.1
PanthergeneCAEEL|WormBase=WBGene00006053|UniProtKB=Q23062
familyPTHR31192
NCBIgene177269
RefSeqproteinNM_068303.5
TrEMBLUniProtAccQ23062
UniProt_GCRPUniProtAccQ23062
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:39WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classssq
Allele (40)
RNASeq_FPKM (74)
Ortholog (31)
ParalogWBGene00006050Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006051Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00006052Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in amphid sheath cell and sperm based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and age-1 based on microarray; RNA-seq; and proteomic studies. Is affected by twenty-eight chemicals including Ethanol; methylmercury hydroxide; and nicotinic acid based on RNA-seq; microarray; and proteomic studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST28H11.1
Corresponding_transcriptT28H11.1.1
Other_sequence (214)
Associated_featureWBsf228249
Experimental_infoRNAi_resultWBRNAi00022580Inferred_automaticallyRNAi_primary
WBRNAi00021725Inferred_automaticallyRNAi_primary
WBRNAi00036108Inferred_automaticallyRNAi_primary
WBRNAi00058954Inferred_automaticallyRNAi_primary
WBRNAi00021719Inferred_automaticallyRNAi_primary
WBRNAi00007446Inferred_automaticallyRNAi_primary
WBRNAi00019418Inferred_automaticallyRNAi_primary
WBRNAi00054449Inferred_automaticallyRNAi_primary
Expr_patternExpr1014267
Expr1157994
Expr2016943
Expr2035091
Drives_constructWBCnstr00014273
WBCnstr00034571
Construct_productWBCnstr00034571
Microarray_results (19)
Expression_cluster (252)
InteractionWBInteraction000103138
WBInteraction000103866
WBInteraction000104876
WBInteraction000105099
WBInteraction000105593
WBInteraction000110656
WBInteraction000112649
WBInteraction000112865
WBInteraction000114373
WBInteraction000114745
WBInteraction000118109
WBInteraction000118632
WBInteraction000118649
WBInteraction000118788
WBInteraction000119228
WBInteraction000119707
WBInteraction000121173
WBInteraction000121588
WBInteraction000124456
WBInteraction000124617
WBInteraction000124765
WBInteraction000124994
WBInteraction000125070
WBInteraction000125792
WBInteraction000125901
WBInteraction000126019
WBInteraction000126861
WBInteraction000127023
WBInteraction000127083
WBInteraction000133282
WBInteraction000133926
WBInteraction000133929
WBInteraction000134264
WBInteraction000134558
WBInteraction000135391
WBInteraction000136567
WBInteraction000137789
WBInteraction000138360
WBInteraction000138484
WBInteraction000141620
WBInteraction000141734
WBInteraction000141759
WBInteraction000142269
WBInteraction000142440
WBInteraction000142568
WBInteraction000142619
WBInteraction000143219
WBInteraction000143687
WBInteraction000144072
WBInteraction000145406
WBInteraction000145935
WBInteraction000146715
WBInteraction000146837
WBInteraction000147108
WBInteraction000147403
WBInteraction000147820
WBInteraction000149430
WBInteraction000149796
WBInteraction000149841
WBInteraction000150426
WBInteraction000159874
WBInteraction000160334
WBInteraction000162091
WBInteraction000162713
WBInteraction000163287
WBInteraction000163306
WBInteraction000164784
WBInteraction000170850
WBInteraction000171423
WBInteraction000171466
WBInteraction000171862
WBInteraction000172560
WBInteraction000174863
WBInteraction000175040
WBInteraction000176517
WBInteraction000176973
WBInteraction000177672
WBInteraction000179544
WBInteraction000182160
WBInteraction000187041
WBInteraction000188387
WBInteraction000189192
WBInteraction000190255
WBInteraction000190395
WBInteraction000190897
WBInteraction000191878
WBInteraction000193054
WBInteraction000193477
WBInteraction000193841
WBInteraction000195038
WBInteraction000195427
WBInteraction000195868
WBInteraction000196149
WBInteraction000196707
WBInteraction000197165
WBInteraction000197242
WBInteraction000198208
WBInteraction000199976
WBInteraction000202529
WBInteraction000202599
WBInteraction000206938
WBInteraction000210009
WBInteraction000211691
WBInteraction000213986
WBInteraction000215163
WBInteraction000217051
WBInteraction000217152
WBInteraction000220138
WBInteraction000224292
WBInteraction000225779
WBInteraction000231468
WBInteraction000231921
WBInteraction000236725
WBInteraction000236762
WBInteraction000237928
WBInteraction000240667
WBInteraction000241134
WBInteraction000242959
WBInteraction000245735
WBInteraction000247491
WBInteraction000248220
WBInteraction000249226
WBInteraction000249982
WBInteraction000253091
WBInteraction000253625
WBInteraction000254658
WBInteraction000259912
WBInteraction000268432
WBInteraction000271654
WBInteraction000275515
WBInteraction000275858
WBInteraction000278699
WBInteraction000282169
WBInteraction000282271
WBInteraction000283154
WBInteraction000284314
WBInteraction000284497
WBInteraction000287047
WBInteraction000292437
WBInteraction000292696
WBInteraction000293672
WBInteraction000300390
WBInteraction000302557
WBInteraction000309311
WBInteraction000313909
WBInteraction000314848
WBInteraction000316857
WBInteraction000319192
WBInteraction000319698
WBInteraction000321331
WBInteraction000322882
WBInteraction000324861
WBInteraction000325860
WBInteraction000325867
WBInteraction000330945
WBInteraction000338252
WBInteraction000341538
WBInteraction000343116
WBInteraction000344213
WBInteraction000352217
WBInteraction000356293
WBInteraction000356932
WBInteraction000364730
WBInteraction000369619
WBInteraction000370357
WBInteraction000378642
WBInteraction000390863
WBInteraction000394130
WBInteraction000395865
WBInteraction000406462
WBInteraction000412043
WBInteraction000413180
WBInteraction000417694
WBInteraction000418896
WBInteraction000421375
WBInteraction000421417
WBInteraction000427385
WBInteraction000429407
WBInteraction000431372
WBInteraction000433674
WBInteraction000436010
WBInteraction000448630
WBInteraction000452793
WBInteraction000453199
WBInteraction000458869
WBInteraction000459916
Map_infoMapIVPosition1.41724Error0.000928
PositivePositive_cloneT28H11Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00025088
WBPaper00038491
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene