WormBase Tree Display for Gene: WBGene00004933
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| WBGene00004933 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | sod-4 | |||||||
| Sequence_name | F55H2.1 | ||||||||
| Molecular_name | F55H2.1a | ||||||||
| F55H2.1a.1 | |||||||||
| CE25009 | |||||||||
| F55H2.1b | |||||||||
| CE43297 | |||||||||
| F55H2.1a.2 | |||||||||
| F55H2.1b.1 | |||||||||
| F55H2.1b.2 | |||||||||
| Other_name | SOD4-1 | Accession_evidence | EMBL | AB003924 | |||||
| CELE_F55H2.1 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | sod-4 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sod | ||||||||
| Reference_allele | WBVar00239211 | ||||||||
| Allele (45) | |||||||||
| Legacy_information | [Lombard D ] pk68 is Tc1 insertion allele. F55H2.1 is ORF with strong homology to Cu/Zn superoxide dismutase. | ||||||||
| [C.elegansII] pk68: Tc1 insertion, no known phenotype. Cloned,F55H2.1, encodes predicted Cu/Zn superoxide dismutase | |||||||||
| Strain | WBStrain00026684 | ||||||||
| WBStrain00028922 | |||||||||
| WBStrain00035560 | |||||||||
| WBStrain00007667 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Ortholog (14) | |||||||||
| Paralog | WBGene00004930 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00007036 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | sod-4 encodes an extracellular Cu2+/Zn2+ superoxide dismutase (SOD) that is one of five C. elegans SOD enzymes; genetic analyses indicates that sod-4 is required for redox regulation of a number of processes including axon pathfinding in the PVQ interneurons, insulin/IGF-1 signaling, and vulval development; large-scale expression studies indicate that sod-4 is expressed in the nervous system, intestine, and rectal gland cells; sod-4 transcripts are significantly upregulated in dauers. | Paper_evidence | WBPaper00003035 | |||||
| WBPaper00006232 | |||||||||
| WBPaper00031006 | |||||||||
| WBPaper00031448 | |||||||||
| WBPaper00031981 | |||||||||
| WBPaper00032404 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 26 Jan 2009 00:00:00 | ||||||||
| Automated_description | Enables superoxide dismutase activity. Involved in superoxide metabolic process. Located in extracellular space and membrane. Expressed in somatic gonad. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F55H2.1a | |||||||
| F55H2.1b | |||||||||
| Corresponding_transcript | F55H2.1a.1 | ||||||||
| F55H2.1a.2 | |||||||||
| F55H2.1b.1 | |||||||||
| F55H2.1b.2 | |||||||||
| Other_sequence (62) | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00048565 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00085922 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076486 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028229 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006441 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015755 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092700 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085918 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085941 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr6208 | ||||||||
| Expr12617 | |||||||||
| Expr1015353 | |||||||||
| Expr1152353 | |||||||||
| Expr2015997 | |||||||||
| Expr2034232 | |||||||||
| Drives_construct | WBCnstr00003214 | ||||||||
| WBCnstr00019135 | |||||||||
| WBCnstr00022295 | |||||||||
| Construct_product | WBCnstr00022295 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (205) | |||||||||
| Interaction (95) | |||||||||
| WBProcess | WBbiopr:00000096 | ||||||||
| WBbiopr:00000121 | |||||||||
| Map_info | Map | III | Position | 0.570123 | Error | 0.000978 | |||
| Positive | Positive_clone | F55H2 | Author_evidence | Lombard DB | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Mapping_data | Multi_point | 3888 | |||||||
| 4993 | |||||||||
| Reference | WBPaper00002541 | ||||||||
| WBPaper00003035 | |||||||||
| WBPaper00003293 | |||||||||
| WBPaper00003872 | |||||||||
| WBPaper00004957 | |||||||||
| WBPaper00005647 | |||||||||
| WBPaper00006232 | |||||||||
| WBPaper00006516 | |||||||||
| WBPaper00012663 | |||||||||
| WBPaper00018237 | |||||||||
| WBPaper00023145 | |||||||||
| WBPaper00025662 | |||||||||
| WBPaper00029337 | |||||||||
| WBPaper00031039 | |||||||||
| WBPaper00031124 | |||||||||
| WBPaper00031448 | |||||||||
| WBPaper00031533 | |||||||||
| WBPaper00031688 | |||||||||
| WBPaper00031851 | |||||||||
| WBPaper00031981 | |||||||||
| WBPaper00032404 | |||||||||
| WBPaper00032640 | |||||||||
| WBPaper00032649 | |||||||||
| WBPaper00032989 | |||||||||
| WBPaper00033133 | |||||||||
| WBPaper00035276 | |||||||||
| WBPaper00035663 | |||||||||
| WBPaper00036249 | |||||||||
| WBPaper00037483 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00038993 | |||||||||
| WBPaper00041408 | |||||||||
| WBPaper00042668 | |||||||||
| WBPaper00043192 | |||||||||
| WBPaper00047992 | |||||||||
| WBPaper00049204 | |||||||||
| WBPaper00050325 | |||||||||
| WBPaper00051554 | |||||||||
| WBPaper00051724 | |||||||||
| WBPaper00052045 | |||||||||
| WBPaper00053864 | |||||||||
| WBPaper00054769 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00055477 | |||||||||
| WBPaper00058783 | |||||||||
| WBPaper00059551 | |||||||||
| WBPaper00060058 | |||||||||
| WBPaper00060201 | |||||||||
| WBPaper00060307 | |||||||||
| WBPaper00060484 | |||||||||
| WBPaper00060884 | |||||||||
| WBPaper00061220 | |||||||||
| WBPaper00063947 | |||||||||
| WBPaper00064187 | |||||||||
| WBPaper00064716 | |||||||||
| WBPaper00064988 | |||||||||
| Method | Gene |
