WormBase Tree Display for Gene: WBGene00007036
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WBGene00007036 | Evidence | Author_evidence | Jensen LT | |||||
---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | ZK430 | |||||
Identity | Version | 1 | ||||||
Name | CGC_name | sod-5 | ||||||
Sequence_name | ZK430.3 | |||||||
Molecular_name | ZK430.3 | |||||||
ZK430.3.1 | ||||||||
CE05080 | ||||||||
Other_name | CELE_ZK430.3 | Accession_evidence | NDB | BX284602 | ||||
Public_name | sod-5 | |||||||
DB_info | Database (13) | |||||||
Species | Caenorhabditis elegans | |||||||
History | Version_change | 1 | 24 May 2004 11:37:54 | WBPerson1845 | Event | Created | ||
Status | Live | |||||||
Gene_info | Biotype | SO:0001217 | ||||||
Gene_class | sod | |||||||
Allele (18) | ||||||||
Strain | WBStrain00026684 | |||||||
WBStrain00007573 | ||||||||
WBStrain00007670 | ||||||||
WBStrain00054749 | ||||||||
RNASeq_FPKM (74) | ||||||||
GO_annotation | 00080055 | |||||||
00080056 | ||||||||
00080057 | ||||||||
00080058 | ||||||||
00080059 | ||||||||
00080060 | ||||||||
00080061 | ||||||||
00115244 | ||||||||
00115245 | ||||||||
00115246 | ||||||||
Ortholog (26) | ||||||||
Paralog | WBGene00004930 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | ||||||||
WormBase-Compara | ||||||||
WBGene00004933 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | ||||||||
Structured_description | Concise_description | sod-5 encodes one of five superoxide (SOD) isozymes in C. elegans; along with SOD-1, SOD-5 is predicted to be one of two cytoplasmic Cu/Zn SODs in C. elegans; sod-5 expression is increased in sod-1 mutant animals and likewise, sod-1 expression is increased in sod-5 mutants, suggesting a possible mechanism of functional compensation between these two genes; the sod-5 promoter contains one copy of a DAF-16 binding element, consistent with observations that sod-5 mRNA levels increase in insulin/IGF-1 signaling pathway mutants. | Paper_evidence | WBPaper00029337 | ||||
WBPaper00031533 | ||||||||
WBPaper00032884 | ||||||||
WBPaper00032989 | ||||||||
Curator_confirmed | WBPerson1843 | |||||||
Date_last_updated | 06 May 2009 00:00:00 | |||||||
Automated_description | Predicted to enable copper ion binding activity and superoxide dismutase activity. Predicted to be involved in removal of superoxide radicals. Expressed in amphid neurons. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; artery disease (multiple); eye disease (multiple); and glucose metabolism disease (multiple). Is an ortholog of human SOD1 (superoxide dismutase 1). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | |||||||
WBPerson37462 | ||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||||
Disease_info | Potential_model (35) | |||||||
Molecular_info | Corresponding_CDS | ZK430.3 | ||||||
Corresponding_transcript | ZK430.3.1 | |||||||
Other_sequence (93) | ||||||||
Associated_feature | WBsf047540 | |||||||
WBsf644101 | ||||||||
WBsf987595 | ||||||||
WBsf987596 | ||||||||
WBsf987597 | ||||||||
WBsf1012085 | ||||||||
WBsf1012086 | ||||||||
WBsf221123 | ||||||||
Experimental_info | RNAi_result | WBRNAi00087931 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00076885 | Inferred_automatically | RNAi_primary | ||||||
WBRNAi00022012 | Inferred_automatically | RNAi_primary | ||||||
WBRNAi00038294 | Inferred_automatically | RNAi_primary | ||||||
WBRNAi00092701 | Inferred_automatically | RNAi_primary | ||||||
WBRNAi00087933 | Inferred_automatically | RNAi_primary | ||||||
WBRNAi00022014 | Inferred_automatically | RNAi_primary | ||||||
WBRNAi00059427 | Inferred_automatically | RNAi_primary | ||||||
WBRNAi00064043 | Inferred_automatically | RNAi_primary | ||||||
WBRNAi00087930 | Inferred_automatically | RNAi_primary | ||||||
Expr_pattern | Expr12757 | |||||||
Expr14239 | ||||||||
Expr1019070 | ||||||||
Expr1162854 | ||||||||
Expr2015998 | ||||||||
Expr2034233 | ||||||||
Drives_construct | WBCnstr00005465 | |||||||
Antibody | WBAntibody00001866 | |||||||
Microarray_results (18) | ||||||||
Expression_cluster (150) | ||||||||
Interaction (143) | ||||||||
WBProcess | WBbiopr:00000096 | |||||||
Map_info | Map | II | Position | -4.6946 | Error | 0.033727 | ||
Positive | Positive_clone | ZK430 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Mapping_data | Multi_point | 5366 | ||||||
5621 | ||||||||
Pseudo_map_position | ||||||||
Reference (60) | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |