WormBase Tree Display for Gene: WBGene00004873
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WBGene00004873 | Evidence | Paper_evidence | WBPaper00005919 | ||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y47D3A | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | smc | ||||||
Allele (301) | |||||||
Strain | WBStrain00036443 | ||||||
WBStrain00007808 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (19) | |||||||
Ortholog (40) | |||||||
Paralog | WBGene00001086 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00001860 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00003367 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00004874 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00010306 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00012198 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00016172 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00019087 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00044079 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Automated_description | Predicted to enable cohesin loader activity and double-stranded DNA binding activity. Predicted to be involved in mitotic sister chromatid cohesion. Part of chromatin and cohesin complex. Human ortholog(s) of this gene implicated in Cornelia de Lange syndrome 3; hepatocellular carcinoma; and intellectual disability. Is an ortholog of human SMC3 (structural maintenance of chromosomes 3). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0080507 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2468) | ||
DOID:1059 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2468) | ||||
DOID:684 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2468) | ||||
Molecular_info | Corresponding_CDS | Y47D3A.26a | |||||
Y47D3A.26c | |||||||
Corresponding_CDS_history | Y47D3A.26:wp130 | ||||||
Y47D3A.26:wp179 | |||||||
Y47D3A.26b:wp273 | |||||||
Corresponding_transcript | Y47D3A.26a.1 | ||||||
Y47D3A.26c.1 | |||||||
Other_sequence (65) | |||||||
Associated_feature (11) | |||||||
Experimental_info | RNAi_result (22) | ||||||
Expr_pattern | Expr1013320 | ||||||
Expr1032414 | |||||||
Expr1160210 | |||||||
Expr2015898 | |||||||
Expr2034131 | |||||||
Antibody | WBAntibody00000638 | ||||||
WBAntibody00002074 | |||||||
WBAntibody00002279 | |||||||
WBAntibody00002399 | |||||||
Microarray_results (24) | |||||||
Expression_cluster (148) | |||||||
Interaction (145) | |||||||
WBProcess | WBbiopr:00000099 | ||||||
Map_info | Map | III | Position | 8.3815 | Error | 0.026044 | |
Positive | Positive_clone | Y47D3A | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (17) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |