WormBase Tree Display for Gene: WBGene00004857
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WBGene00004857 | SMap | S_parent | Sequence | R13F6 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | sma-3 | Person_evidence | WBPerson261 | |||||
Sequence_name | R13F6.9 | ||||||||
Molecular_name | R13F6.9 | ||||||||
R13F6.9.1 | |||||||||
CE25974 | |||||||||
Other_name | CELE_R13F6.9 | Accession_evidence | NDB | BX284603 | |||||
Public_name | sma-3 | ||||||||
DB_info | Database | AceView | gene | 3H952 | |||||
WormQTL | gene | WBGene00004857 | |||||||
SignaLink | protein | WBGene00004857 | |||||||
WormFlux | gene | WBGene00004857 | |||||||
NDB | locus_tag | CELE_R13F6.9 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004857|UniProtKB=P45896 | |||||||
family | PTHR13703 | ||||||||
NCBI | gene | 175955 | |||||||
RefSeq | protein | NM_066092.5 | |||||||
SwissProt | UniProtAcc | P45896 | |||||||
UniProt_GCRP | UniProtAcc | P45896 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | sma | ||||||||
Reference_allele | WBVar00143246 | ||||||||
Allele (54) | |||||||||
Legacy_information | e491 : short somewhat dumpy; males have crumpled spicules. ES3 (adult) ME0. NA3 (e637 e958). | ||||||||
See also e491 | |||||||||
[C.elegansII] e491 : short, somewhat dumpy; males have crumpled spicules, abnormal rays. Similar to Sma-2, Sma-4, Daf-4ES3 (adult), ME0. OA2: e637, e958. Cloned: encodes DWARFIN. [Baird et al. 1991; LT; PB] | |||||||||
Strain (23) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (43) | |||||||||
Ortholog | WBGene00054654 | Caenorhabditis remanei | From_analysis | OMA | |||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00036452 | Caenorhabditis briggsae | From_analysis | Hillier-set | ||||||
OrthoMCL | |||||||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00143484 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00136408 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00157685 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
WBGene00122925 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
WBGene00064235 | Caenorhabditis remanei | From_analysis | TreeFam | ||||||
WBGene00223401 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
CBOVI.g6012 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP21.g2833 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
CSP26.g18621 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g17313 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g352 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP31.g20000 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g3094 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g20872 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP39.g15528 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP39.g1779 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP39.g6554 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g3045 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cang_2012_03_13_00601.g12660 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
Cni-sma-3 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold629.g14452 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00009.g615 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_12471 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_009897 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
OTIPU.nOt.2.0.1.g04684 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
Sp34_30247300 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrIII_pilon.g8015 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00207557 | Caenorhabditis japonica | From_analysis | WormBase-Compara | ||||||
WBGene00238556 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
WBGene00203648 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
WBGene00285864 | Trichuris muris | From_analysis | WormBase-Compara | ||||||
FB:FBgn0011648 | Drosophila melanogaster | From_analysis | OMA | ||||||
OrthoFinder | |||||||||
Panther | |||||||||
Paralog | WBGene00000899 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
WormBase-Compara | |||||||||
WBGene00000904 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00000910 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00004856 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00004858 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00006445 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | sma-3 encodes a Smad protein; during development, SMA-3 functions as part of a DBL-1/SMA-6 TGF-beta-related signaling pathway that controls body size and male tail sensory ray and spicule formation; sma-3, through this pathway, also regulates reproductive aging; studies have shown that a reduction of TGF-beta pathway genes extends reproductive span by maintaining oocyte and germline quality; sma-3 is widely expressed at all developmental stages, beginning during embryogenesis, continuing through all larval stages, and seen very strongly in adult hermaphrodites and males; a SMA-3::GFP is detected in the pharynx, intestine, and hypodermis and localizes to the nucleus; sma-3 expression in the hypodermis is necessary and sufficient for normal body size; SMA-3 can physically interact with the LIN-31 forkhead transcription factor and with DAF-16. | Paper_evidence | WBPaper00004199 | |||||
WBPaper00005567 | |||||||||
WBPaper00026644 | |||||||||
WBPaper00035556 | |||||||||
WBPaper00037682 | |||||||||
WBPaper00051279 | |||||||||
Person_evidence | WBPerson50 | ||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 17 Jul 2017 00:00:00 | ||||||||
Automated_description | Enables transcription coactivator activity. Involved in several processes, including defense response to other organism; male anatomical structure morphogenesis; and regulation of developmental process. Located in cytoplasm and nucleus. Expressed in several structures, including hypodermis; intestine; pharynx; somatic gonad; and tail. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R13F6.9 | |||||||
Corresponding_transcript | R13F6.9.1 | ||||||||
Other_sequence (32) | |||||||||
Associated_feature | WBsf978789 | ||||||||
WBsf992887 | |||||||||
WBsf992888 | |||||||||
WBsf1015163 | |||||||||
WBsf226875 | |||||||||
Transcription_factor | WBTranscriptionFactor001049 | ||||||||
Experimental_info | RNAi_result | WBRNAi00009073 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00051929 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00097938 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00026120 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00081750 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00051928 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027662 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00075973 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00005965 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00097937 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (11) | |||||||||
Drives_construct (16) | |||||||||
Construct_product (21) | |||||||||
Regulate_expr_cluster | WBPaper00062491:sma-3(wk30)_downregulated | ||||||||
WBPaper00062491:sma-3(wk30)_upregulated | |||||||||
Microarray_results (18) | |||||||||
Expression_cluster (114) | |||||||||
Interaction (92) | |||||||||
WBProcess | WBbiopr:00000025 | ||||||||
WBbiopr:00000039 | |||||||||
Map_info | Map | III | Position | -0.9165 | Error | 0.001173 | |||
Well_ordered | |||||||||
Positive | Inside_rearr | sDf127 | |||||||
nDf16 | |||||||||
Positive_clone | R13F6 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
Mapping_data | 2_point | 64 | |||||||
482 | |||||||||
6038 | |||||||||
6040 | |||||||||
Multi_point (69) | |||||||||
Pos_neg_data | 1613 | ||||||||
1614 | |||||||||
1615 | |||||||||
5139 | |||||||||
8675 | |||||||||
8765 | |||||||||
8815 | |||||||||
Landmark_gene | |||||||||
Reference (176) | |||||||||
Picture | WBPicture0000013077 | ||||||||
Method | Gene |