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WormBase Tree Display for Gene: WBGene00004810

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Name Class

WBGene00004810EvidenceCGC_data_submission
SMapS_parentSequenceY60A3A
IdentityVersion1
NameCGC_nameskr-4Person_evidenceWBPerson322
Sequence_nameY60A3A.18
Molecular_nameY60A3A.18
Y60A3A.18.1
CE24523
Other_nameCELE_Y60A3A.18Accession_evidenceNDBBX284605
Public_nameskr-4
DB_infoDatabaseAceViewgene5U393
WormQTLgeneWBGene00004810
WormFluxgeneWBGene00004810
NDBlocus_tagCELE_Y60A3A.18
PanthergeneCAEEL|WormBase=WBGene00004810|UniProtKB=Q9U1Y9
familyPTHR11165
NCBIgene191762
RefSeqproteinNM_075456.7
TREEFAMTREEFAM_IDTF354233
TrEMBLUniProtAccQ9U1Y9
UniProt_GCRPUniProtAccQ9U1Y9
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:36WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classskr
Allele (56)
RNASeq_FPKM (74)
GO_annotation00098536
00098537
00098538
00098539
00098540
00113217
OrthologWBGene00141805Caenorhabditis brenneriFrom_analysisOMA
WBGene00095007Pristionchus pacificusFrom_analysisOMA
WBGene00112452Pristionchus pacificusFrom_analysisOMA
WBGene00117278Pristionchus pacificusFrom_analysisOMA
CBOVI.g11746Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP28.g10982Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g11197Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g11199Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g11200Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g11201Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g11203Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g11204Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g11205Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g12369Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g15964Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g16751Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g16784Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g16788Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g16789Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g16790Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g16819Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g16820Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g19203Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g6900Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g6901Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g6949Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g6950Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g8946Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g12347Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g12631Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g14020Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g16985Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g16986Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g16987Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g16988Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g22950Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g22951Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g22952Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g22954Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g22955Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g22956Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g22957Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g22958Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g4094Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g5423Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g12189Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12581Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g24524Caenorhabditis uteleiaFrom_analysisWormBase-Compara
Pan_g21634Panagrellus redivivusFrom_analysisWormBase-Compara
chrV_pilon.g17989Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00246295Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00258939Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285691Trichuris murisFrom_analysisWormBase-Compara
SGD:S000002736Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
FB:FBgn0025637Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OMA
OrthoFinder
Panther
PhylomeDB
FB:FBgn0026174Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OMA
OrthoFinder
Panther
PhylomeDB
FB:FBgn0026175Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OMA
OrthoFinder
Panther
PhylomeDB
FB:FBgn0031074Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OMA
OrthoFinder
Panther
PhylomeDB
FB:FBgn0026176Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OMA
OrthoFinder
Panther
PhylomeDB
FB:FBgn0034863Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OMA
OrthoFinder
Panther
PhylomeDB
ZFIN:ZDB-GENE-040426-1707Danio rerioFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
HGNC:10899Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
MGI:103575Mus musculusFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
RGD:1359648Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
Paralog (19)
Structured_descriptionConcise_descriptionThe skr-4 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-4(RNAi) animals are at least superficially normal.Paper_evidenceWBPaper00005128
WBPaper00005129
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable cullin family protein binding activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Expressed in intestine. Is an ortholog of human SKP1 (S-phase kinase associated protein 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY60A3A.18
Corresponding_transcriptY60A3A.18.1
Associated_featureWBsf1003388
WBsf1021843
Experimental_infoRNAi_resultWBRNAi00069084Inferred_automaticallyRNAi_primary
WBRNAi00086783Inferred_automaticallyRNAi_primary
WBRNAi00057808Inferred_automaticallyRNAi_primary
WBRNAi00086782Inferred_automaticallyRNAi_primary
WBRNAi00086801Inferred_automaticallyRNAi_primary
WBRNAi00069085Inferred_automaticallyRNAi_primary
Expr_patternExpr2440
Expr1161240
Expr2015852
Expr2034085
Drives_constructWBCnstr00010831
Construct_productWBCnstr00010831
Microarray_results (15)
Expression_cluster (246)
InteractionWBInteraction000543612
WBInteraction000549972
WBInteraction000549998
WBInteraction000550271
WBInteraction000567847
WBInteraction000576559
WBInteraction000580394
WBInteraction000583600
Map_infoMapVPosition23.9984Error0.009899
PositivePositive_cloneY60A3AInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (7)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene