WormBase Tree Display for Gene: WBGene00117278
expand all nodes | collapse all nodes | view schema
| WBGene00117278 | SMap | S_parent | Sequence | PPA_ChrV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 7 | |||||||
| Name | Sequence_name | PPA27724 | |||||||
| Molecular_name | PPA27724 | ||||||||
| PPA27724.1 | |||||||||
| PP64863 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000084539 | ||||||||
| UMM-S60-18.46 | Person_evidence | WBPerson606 | |||||||
| Public_name | PPA27724 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:07 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 08 Feb 2019 15:42:27 | WBPerson1983 | Name_change | CGC_name | Ppa-skr-4.2 | ||||
| 3 | 08 May 2019 10:09:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 01 Oct 2019 10:47:49 | WBPerson1983 | Name_change | CGC_name | Ppa-skr-4.1 | ||||
| 5 | 04 Feb 2020 15:43:57 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 May 2021 19:05:19 | WBPerson1983 | Name_change | CGC_name | Ppa-skr-4.2 | ||||
| 7 | 28 Jul 2021 11:12:30 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| 24.4339 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| 73.3016 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00185786 | ||||||||
| Ortholog | WBGene00004810 | Caenorhabditis elegans | From_analysis | OMA | |||||
| WBGene00246295 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
| CBOVI.g11746 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
| Pan_g21634 | Panagrellus redivivus | From_analysis | WormBase-Compara | ||||||
| WBGene00258939 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
| WBGene00285691 | Trichuris muris | From_analysis | WormBase-Compara | ||||||
| Paralog (21) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in ubiquitin-dependent protein catabolic process. Is an ortholog of C. elegans skr-4. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA27724 | |||||||
| Corresponding_transcript | PPA27724.1 | ||||||||
| Other_sequence | Dviv_isotig32727 | ||||||||
| EX559751.1 | |||||||||
| EX555523.1 | |||||||||
| ACC09241_1 | |||||||||
| Tcol_isotig10703 | |||||||||
| EX555064.1 | |||||||||
| DA05541 | |||||||||
| Acan_isotig12811 | |||||||||
| Remark | [190507 pad] The CGC name Ppa-skr-4.2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [200204 pad] The CGC name Ppa-skr-4.1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| [210728 pad] The CGC name Ppa-skr-4.2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
