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WormBase Tree Display for Gene: WBGene00004810

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Name Class

WBGene00004810EvidenceCGC_data_submission
SMapS_parentSequenceY60A3A
IdentityVersion1
NameCGC_nameskr-4Person_evidenceWBPerson322
Sequence_nameY60A3A.18
Molecular_nameY60A3A.18
Y60A3A.18.1
CE24523
Other_nameCELE_Y60A3A.18Accession_evidenceNDBBX284605
Public_nameskr-4
DB_infoDatabaseAceViewgene5U393
WormQTLgeneWBGene00004810
WormFluxgeneWBGene00004810
NDBlocus_tagCELE_Y60A3A.18
PanthergeneCAEEL|WormBase=WBGene00004810|UniProtKB=Q9U1Y9
familyPTHR11165
NCBIgene191762
RefSeqproteinNM_075456.7
TREEFAMTREEFAM_IDTF354233
TrEMBLUniProtAccQ9U1Y9
UniProt_GCRPUniProtAccQ9U1Y9
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:36WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classskr
Allele (56)
RNASeq_FPKM (74)
GO_annotation00098157
00098158
00098159
00098160
00098161
00112924
Ortholog (22)
Paralog (19)
Structured_descriptionConcise_descriptionThe skr-4 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-4(RNAi) animals are at least superficially normal.Paper_evidenceWBPaper00005128
WBPaper00005129
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable cullin family protein binding activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Expressed in intestine. Is an ortholog of human SKP1 (S-phase kinase associated protein 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS290 version of WormBase
Date_last_updated11 Sep 2023 00:00:00
Molecular_infoCorresponding_CDSY60A3A.18
Corresponding_transcriptY60A3A.18.1
Associated_featureWBsf1003388
WBsf1021843
Experimental_infoRNAi_resultWBRNAi00069084Inferred_automaticallyRNAi_primary
WBRNAi00086783Inferred_automaticallyRNAi_primary
WBRNAi00057808Inferred_automaticallyRNAi_primary
WBRNAi00086782Inferred_automaticallyRNAi_primary
WBRNAi00086801Inferred_automaticallyRNAi_primary
WBRNAi00069085Inferred_automaticallyRNAi_primary
Expr_patternExpr2440
Expr1161240
Expr2015852
Expr2034085
Drives_constructWBCnstr00010831
Construct_productWBCnstr00010831
Microarray_results (15)
Expression_cluster (232)
InteractionWBInteraction000543612
WBInteraction000549972
WBInteraction000549998
WBInteraction000550271
WBInteraction000567847
WBInteraction000576559
WBInteraction000580394
WBInteraction000583600
Map_infoMapVPosition23.9984Error0.009899
PositivePositive_cloneY60A3AInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00055090
WBPaper00059442
WBPaper00061319
WBPaper00062289
WBPaper00062345
WBPaper00065331
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene