WormBase Tree Display for Gene: WBGene00004739
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| WBGene00004739 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | scd-1 | Person_evidence | WBPerson655 | |||||
| Sequence_name | H20J18.1 | ||||||||
| Molecular_name (28) | |||||||||
| Other_name | CELE_H20J18.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | scd-1 | ||||||||
| DB_info | Database | AceView | gene | XN124 | |||||
| WormQTL | gene | WBGene00004739 | |||||||
| WormFlux | gene | WBGene00004739 | |||||||
| NDB | locus_tag | CELE_H20J18.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004739|UniProtKB=Q9XXK5 | |||||||
| family | PTHR44240 | ||||||||
| NCBI | gene | 181408 | |||||||
| RefSeq | protein | NM_001373534.4 | |||||||
| NM_001381122.2 | |||||||||
| NM_001381123.3 | |||||||||
| NM_001381121.2 | |||||||||
| NM_171974.8 | |||||||||
| NM_001381120.2 | |||||||||
| NM_001373531.3 | |||||||||
| NM_001373535.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF350258 | |||||||
| TrEMBL | UniProtAcc | A0A4V0IN69 | |||||||
| A0A4V0INV4 | |||||||||
| A0A4V0IKH6 | |||||||||
| A0A4V0IL24 | |||||||||
| Q8MQ12 | |||||||||
| A0A4V0IKL1 | |||||||||
| Q9XXK5 | |||||||||
| A0A4V0INN2 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A4V0IN69 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 20 May 2019 15:21:47 | WBPerson4025 | Event | Acquires_merge | WBGene00007634 | ||||
| Acquires_merge | WBGene00007634 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | scd | ||||||||
| Allele (382) | |||||||||
| Legacy_information | [Inoue T] suppressor of daf-14 | ||||||||
| Complementation_data | [Inoue T] complements daf-3(e1376), daf-12(m20), daf-12(m25) | ||||||||
| Strain | WBStrain00003096 | ||||||||
| WBStrain00022787 | |||||||||
| WBStrain00054730 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00003894 | ||||||||
| Ortholog (23) | |||||||||
| Structured_description | Concise_description | scd-1 encodes a novel protein with several regions that are extremely glutamine (Q) rich, interspersed with other residues (usually alanine); SCD-1 affects signalling by proteins in the DAF-7/transforming growth factor (TGF)-beta pathway (DAF-1, DAF-8, and DAF-14), and the Q-rich regions of SCD-1 protein may mediate epigenetic changes of stably heritable tertiary conformation. | Paper_evidence | WBPaper00004404 | |||||
| WBPaper00005068 | |||||||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| WBPaper00017938 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including ABalppppppa; ABpraaapppa; head mesodermal cell; neurons; and pharyngeal cell based on Chronogram; microarray; RNA-seq; tiling array; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by nineteen chemicals including 1-methylnicotinamide; rotenone; and multi-walled carbon nanotube based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | H20J18.1a | |||||||
| H20J18.1b | |||||||||
| H20J18.1c | |||||||||
| H20J18.1d | |||||||||
| H20J18.1e | |||||||||
| H20J18.1f | |||||||||
| H20J18.1g | |||||||||
| H20J18.1h | |||||||||
| Corresponding_CDS_history | H20J18.1:wp83 | ||||||||
| Corresponding_transcript (12) | |||||||||
| Other_sequence (11) | |||||||||
| Associated_feature (29) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00001215 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00111737 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015031 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040728 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00080823 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00049450 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016289 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00067975 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (12) | |||||||||
| Drives_construct | WBCnstr00003581 | ||||||||
| WBCnstr00033590 | |||||||||
| WBCnstr00035418 | |||||||||
| Construct_product | WBCnstr00033590 | ||||||||
| WBCnstr00035418 | |||||||||
| Microarray_results (46) | |||||||||
| Expression_cluster (207) | |||||||||
| Interaction (47) | |||||||||
| Map_info | Map | X | Position | 7.13772 | Error | 0.028432 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | F45E6 | Author_evidence | Ailion EMM | |||||
| H20J18 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Negative | Outside_rearr | nDf19 | |||||||
| Mapping_data | 2_point | 7100 | |||||||
| 7105 | |||||||||
| 7106 | |||||||||
| Multi_point | 3815 | ||||||||
| 3816 | |||||||||
| 3817 | |||||||||
| 3818 | |||||||||
| 3820 | |||||||||
| Pos_neg_data | 10263 | ||||||||
| Reference | WBPaper00004404 | ||||||||
| WBPaper00004925 | |||||||||
| WBPaper00006103 | |||||||||
| WBPaper00010911 | |||||||||
| WBPaper00017938 | |||||||||
| WBPaper00023261 | |||||||||
| WBPaper00027315 | |||||||||
| WBPaper00033162 | |||||||||
| WBPaper00033845 | |||||||||
| Method | Gene |
