WormBase Tree Display for Gene: WBGene00004739

WBGene00004739 SMap: S_parent: Sequence: CHROMOSOME_X
  Identity: Version: 2
    Name: CGC_name: scd-1 Person_evidence: WBPerson655
      Sequence_name: H20J18.1
      Molecular_name (28)
      Other_name: CELE_H20J18.1 Accession_evidence: NDB BX284606
      Public_name: scd-1
    DB_info: Database: AceView gene XN124
        WormQTL gene WBGene00004739
        WormFlux gene WBGene00004739
        NDB locus_tag CELE_H20J18.1
        Panther gene CAEEL|WormBase=WBGene00004739|UniProtKB=Q9XXK5
          family PTHR44240
        NCBI gene 181408
        RefSeq protein NM_001373534.4
            NM_001381122.2
            NM_001381123.3
            NM_001381121.2
            NM_171974.8
            NM_001381120.2
            NM_001373531.3
            NM_001373535.3
        TREEFAM TREEFAM_ID TF350258
        TrEMBL UniProtAcc A0A4V0IN69
            A0A4V0INV4
            A0A4V0IKH6
            A0A4V0IL24
            Q8MQ12
            A0A4V0IKL1
            Q9XXK5
            A0A4V0INN2
        UniProt_GCRP UniProtAcc A0A4V0IN69
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:36 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 20 May 2019 15:21:47 WBPerson4025 Event: Acquires_merge: WBGene00007634
      Acquires_merge: WBGene00007634
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: scd
    Allele: WBVar00242542 Inferred_automatically: From strain object: JT248
      WBVar00242558
      WBVar00242557
      WBVar01195257
      WBVar01195258
      WBVar01195259
      WBVar01499887
      WBVar02009259
      WBVar01195260
      WBVar01195261
      WBVar02009260
      WBVar01499888
      WBVar01195262
      WBVar02009261
      WBVar02009262
      WBVar01195263
      WBVar02009263
      WBVar02034795
      WBVar01787255
      WBVar01195264
      WBVar02034796
      WBVar02112877
      WBVar01195265
      WBVar01787256
      WBVar02034797
      WBVar01195266
      WBVar01787257
      WBVar02112327
      WBVar01195267
      WBVar01499710
      WBVar01787258
      WBVar02034798
      WBVar01195268
      WBVar01787259
      WBVar01491430
      WBVar02034799
      WBVar01195269
      WBVar01787260
      WBVar02034800
      WBVar01195270
      WBVar01787261
      WBVar02034801
      WBVar01195271
      WBVar02034802
      WBVar01787262
      WBVar02034803
      WBVar01787263
      WBVar01195272
      WBVar01787264
      WBVar02034804
      WBVar01195273
      WBVar01195274
      WBVar02034805
      WBVar01787265
      WBVar01195275
      WBVar02034806
      WBVar01787266
      WBVar01195276
      WBVar01787267
      WBVar02034807
      WBVar01195277
      WBVar01787268
      WBVar02034808
      WBVar01195278
      WBVar02034809
      WBVar01787269
      WBVar01195279
      WBVar01787270
      WBVar01787271
      WBVar01195280
      WBVar01195281
      WBVar01787272
      WBVar01195282
      WBVar01787273
      WBVar01195283
      WBVar01787274
      WBVar00258388
      WBVar01787275
      WBVar01195284
      WBVar01195285
      WBVar01787276
      WBVar01835102
      WBVar01897950
      WBVar01195286
      WBVar01787277
      WBVar01787278
      WBVar01195287
      WBVar01835103
      WBVar01195288
      WBVar00519771
      WBVar01787279
      WBVar01835104
      WBVar01835105
      WBVar00519772
      WBVar01787280
      WBVar01195289
      WBVar01835106
      WBVar01195290
      WBVar01787281
      WBVar00519773
      WBVar01787282
      WBVar01195291
      WBVar01835107
      WBVar00519774
      WBVar01787283
      WBVar01195292
      WBVar01835108
      WBVar00519775
      WBVar00519776
      WBVar01195293
      WBVar01835109
      WBVar01787284
      WBVar01787285
      WBVar00519777
      WBVar01849581
      WBVar01195294
      WBVar00519778
      WBVar01787286
      WBVar01195295
      WBVar01787287
      WBVar00519779
      WBVar01195296
      WBVar01787288
      WBVar00519780
      WBVar01195297
      WBVar01195298
      WBVar01787289
      WBVar00519781
      WBVar01787290
      WBVar01195299
      WBVar00519782
      WBVar01787291
      WBVar00519783
      WBVar01195300
      WBVar01195301
      WBVar01787292
      WBVar00519784
      WBVar00243289
      WBVar00519785
      WBVar01787293
      WBVar01195302
      WBVar00519786
      WBVar01787294
      WBVar01195303
      WBVar00519787
      WBVar01787295
      WBVar01195304
      WBVar00519788
      WBVar01787296
      WBVar01195305
      WBVar01195306
      WBVar01787297
      WBVar00519789
      WBVar01195307
      WBVar00519790
      WBVar01787298
      WBVar00519791
      WBVar01195308
      WBVar00519792
      WBVar01195309
      WBVar00519793
      WBVar00519794
      WBVar02015622
      WBVar00519795
      WBVar00519796
      WBVar00519797
      WBVar00519798
      WBVar01825286
      WBVar00519799
      WBVar00519800
      WBVar00519801
      WBVar00519802
      WBVar00519803
      WBVar00519804
      WBVar00519805
      WBVar00519806
      WBVar01981444
      WBVar00519807
      WBVar01471664
      WBVar01981445
      WBVar00519808
      WBVar01471665
      WBVar00519809
      WBVar01471666
      WBVar00519810
      WBVar01471667
      WBVar00519811
      WBVar00519812
      WBVar01471668
      WBVar00303816
      WBVar00519813
      WBVar01471669
      WBVar01471670
      WBVar00519814
      WBVar01471671
      WBVar00519815
      WBVar00519816
      WBVar01954731
      WBVar01471672
      WBVar00519817
      WBVar01954732
      WBVar01471673
      WBVar01954733
      WBVar02152422
      WBVar01471674
      WBVar00519818
      WBVar01954734
      WBVar00519819
      WBVar00519820
      WBVar01954735
      WBVar00519821
      WBVar01954736
      WBVar01954737
      WBVar00519822
      WBVar01954738
      WBVar00519823
      WBVar01954739
      WBVar00519824
      WBVar01954740
      WBVar02045258
      WBVar02045259
      WBVar02045260
      WBVar02011212
      WBVar01195163
      WBVar01195164
      WBVar01195165
      WBVar01195166
      WBVar01195167
      WBVar01195168
      WBVar01195169
      WBVar02125176
      WBVar01195170
      WBVar01195171
      WBVar01195172
      WBVar01195173
      WBVar01195174
      WBVar01195175
      WBVar01621679
      WBVar01195176
      WBVar01928354
      WBVar01195177
      WBVar01621680
      WBVar01195178
      WBVar01621681
      WBVar01195179
      WBVar01621682
      WBVar01195180
      WBVar01621683
      WBVar01621684
      WBVar01195181
      WBVar01621685
      WBVar01195182
      WBVar01621686
      WBVar01195183
      WBVar01195184
      WBVar01195185
      WBVar01195186
      WBVar01195187
      WBVar01195188
      WBVar01195189
      WBVar01195190
      WBVar02052183
      WBVar01195191
      WBVar00083583
      WBVar01195192
      WBVar00083584
      WBVar01195193
      WBVar01900250
      WBVar01195194
      WBVar01195195
      WBVar02140277
      WBVar01195196
      WBVar02066067
      WBVar01195197
      WBVar01195198
      WBVar01690892
      WBVar01759656
      WBVar01195199
      WBVar01195200
      WBVar01690893
      WBVar01195201
      WBVar01690894
      WBVar01690895
      WBVar01987996
      WBVar01195202
      WBVar01987997
      WBVar01690896
      WBVar01195203
      WBVar01690897
      WBVar01195204
      WBVar01195205
      WBVar01690898
      WBVar01195206
      WBVar01690899
      WBVar01195207
      WBVar01690900
      WBVar00256839
      WBVar01690901
      WBVar01195208
      WBVar02100490
      WBVar01195209
      WBVar01195210
      WBVar02151930
      WBVar01195211
      WBVar01195212
      WBVar01195213
      WBVar01195214
      WBVar01195215
      WBVar01195216
      WBVar01195217
      WBVar01195218
      WBVar00315382
      WBVar01195219
      WBVar01195220
      WBVar01195221
      WBVar01195222
      WBVar02078961
      WBVar01195223
      WBVar01195224
      WBVar01195225
      WBVar01195226
      WBVar01195227
      WBVar01693686
      WBVar01195228
      WBVar01195229
      WBVar00305991
      WBVar01195230
      WBVar01195231
      WBVar01195232
      WBVar01195233
      WBVar00258705
      WBVar02151584
      WBVar01195234
      WBVar01571573
      WBVar01195235
      WBVar01195236
      WBVar01571574
      WBVar01571575
      WBVar01195237
      WBVar01571576
      WBVar01195238
      WBVar01571577
      WBVar01816908
      WBVar01195239
      WBVar01571578
      WBVar01195240
      WBVar01816909
      WBVar01195241
      WBVar01571579
      WBVar01816910
      WBVar01816911
      WBVar01571580
      WBVar01195242
      WBVar01816912
      WBVar01195243
      WBVar01571581
      WBVar01571582
      WBVar01816913
      WBVar01195244
      WBVar01571583
      WBVar01816914
      WBVar01195245
      WBVar01816915
      WBVar01571584
      WBVar01195246
      WBVar01571585
      WBVar01816916
      WBVar01195247
      WBVar01571586
      WBVar01195248
      WBVar01816917
      WBVar01195249
      WBVar01816918
      WBVar01195250
      WBVar01195251
      WBVar01195252
      WBVar01498960
      WBVar01195253
      WBVar01195254
      WBVar01195255
      WBVar01500067
      WBVar01195256
    Legacy_information: [Inoue T] suppressor of daf-14
    Complementation_data: [Inoue T] complements daf-3(e1376), daf-12(m20), daf-12(m25)
    Strain: WBStrain00003096
      WBStrain00022787
      WBStrain00054730
    RNASeq_FPKM (74)
    GO_annotation: 00003894
    Ortholog (23)
    Structured_description: Concise_description: scd-1 encodes a novel protein with several regions that are extremely glutamine (Q) rich, interspersed with other residues (usually alanine); SCD-1 affects signalling by proteins in the DAF-7/transforming growth factor (TGF)-beta pathway (DAF-1, DAF-8, and DAF-14), and the Q-rich regions of SCD-1 protein may mediate epigenetic changes of stably heritable tertiary conformation. Paper_evidence: WBPaper00004404
            WBPaper00005068
            WBPaper00012788
            WBPaper00012830
            WBPaper00012882
            WBPaper00012897
            WBPaper00013003
            WBPaper00017938
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in several structures, including ABalppppppa; ABpraaapppa; head mesodermal cell; neurons; and pharyngeal cell based on Chronogram; microarray; RNA-seq; tiling array; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by nineteen chemicals including 1-methylnicotinamide; rotenone; and multi-walled carbon nanotube based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: H20J18.1a
      H20J18.1b
      H20J18.1c
      H20J18.1d
      H20J18.1e
      H20J18.1f
      H20J18.1g
      H20J18.1h
    Corresponding_CDS_history: H20J18.1:wp83
    Corresponding_transcript (12)
    Other_sequence (11)
    Associated_feature (29)
  Experimental_info: RNAi_result: WBRNAi00001215 Inferred_automatically: RNAi_primary
      WBRNAi00111737 Inferred_automatically: RNAi_primary
      WBRNAi00015031 Inferred_automatically: RNAi_primary
      WBRNAi00040728 Inferred_automatically: RNAi_primary
      WBRNAi00080823 Inferred_automatically: RNAi_primary
      WBRNAi00049450 Inferred_automatically: RNAi_primary
      WBRNAi00016289 Inferred_automatically: RNAi_primary
      WBRNAi00067975 Inferred_automatically: RNAi_primary
    Expr_pattern (12)
    Drives_construct: WBCnstr00003581
      WBCnstr00033590
      WBCnstr00035418
    Construct_product: WBCnstr00033590
      WBCnstr00035418
    Microarray_results (46)
    Expression_cluster (207)
    Interaction (47)
  Map_info: Map: X Position: 7.13772 Error: 0.028432
    Well_ordered
    Positive: Positive_clone: F45E6 Author_evidence: Ailion EMM
        H20J18 Inferred_automatically: From sequence, transcript, pseudogene data
    Negative: Outside_rearr: nDf19
    Mapping_data: 2_point: 7100
        7105
        7106
      Multi_point: 3815
        3816
        3817
        3818
        3820
      Pos_neg_data: 10263
  Reference: WBPaper00004404
    WBPaper00004925
    WBPaper00006103
    WBPaper00010911
    WBPaper00017938
    WBPaper00023261
    WBPaper00027315
    WBPaper00033162
    WBPaper00033845
  Method: Gene