WormBase Tree Display for Gene: WBGene00004739
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WBGene00004739 | SMap | S_parent | Sequence | CHROMOSOME_X | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | scd-1 | Person_evidence | WBPerson655 | |||
Sequence_name | H20J18.1 | ||||||
Molecular_name (28) | |||||||
Other_name | CELE_H20J18.1 | Accession_evidence | NDB | BX284606 | |||
Public_name | scd-1 | ||||||
DB_info | Database | AceView | gene | XN124 | |||
WormQTL | gene | WBGene00004739 | |||||
WormFlux | gene | WBGene00004739 | |||||
NDB | locus_tag | CELE_H20J18.1 | |||||
Panther | gene | CAEEL|WormBase=WBGene00004739|UniProtKB=Q9XXK5 | |||||
family | PTHR44240 | ||||||
NCBI | gene | 181408 | |||||
RefSeq | protein | NM_001373534.4 | |||||
NM_001381122.2 | |||||||
NM_001381123.3 | |||||||
NM_001381121.2 | |||||||
NM_171974.8 | |||||||
NM_001381120.2 | |||||||
NM_001373531.3 | |||||||
NM_001373535.3 | |||||||
TREEFAM | TREEFAM_ID | TF350258 | |||||
TrEMBL | UniProtAcc | A0A4V0IN69 | |||||
A0A4V0INV4 | |||||||
A0A4V0IKH6 | |||||||
A0A4V0IL24 | |||||||
Q8MQ12 | |||||||
A0A4V0IKL1 | |||||||
Q9XXK5 | |||||||
A0A4V0INN2 | |||||||
UniProt_GCRP | UniProtAcc | A0A4V0IN69 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Acquires_merge | WBGene00007634 | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | scd | ||||||
Allele (382) | |||||||
Legacy_information | [Inoue T] suppressor of daf-14 | ||||||
Complementation_data | [Inoue T] complements daf-3(e1376), daf-12(m20), daf-12(m25) | ||||||
Strain | WBStrain00003096 | ||||||
WBStrain00022787 | |||||||
WBStrain00054730 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00003894 | ||||||
Ortholog (23) | |||||||
Structured_description | Concise_description | scd-1 encodes a novel protein with several regions that are extremely glutamine (Q) rich, interspersed with other residues (usually alanine); SCD-1 affects signalling by proteins in the DAF-7/transforming growth factor (TGF)-beta pathway (DAF-1, DAF-8, and DAF-14), and the Q-rich regions of SCD-1 protein may mediate epigenetic changes of stably heritable tertiary conformation. | Paper_evidence | WBPaper00004404 | |||
WBPaper00005068 | |||||||
WBPaper00012788 | |||||||
WBPaper00012830 | |||||||
WBPaper00012882 | |||||||
WBPaper00012897 | |||||||
WBPaper00013003 | |||||||
WBPaper00017938 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enriched in several structures, including ABalppppppa; ABpraaapppa; head mesodermal cell; neurons; and pharyngeal cell based on Chronogram; microarray; RNA-seq; tiling array; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by nineteen chemicals including 1-methylnicotinamide; rotenone; and multi-walled carbon nanotube based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | H20J18.1a | |||||
H20J18.1b | |||||||
H20J18.1c | |||||||
H20J18.1d | |||||||
H20J18.1e | |||||||
H20J18.1f | |||||||
H20J18.1g | |||||||
H20J18.1h | |||||||
Corresponding_CDS_history | H20J18.1:wp83 | ||||||
Corresponding_transcript (12) | |||||||
Other_sequence (11) | |||||||
Associated_feature (29) | |||||||
Experimental_info | RNAi_result | WBRNAi00001215 | Inferred_automatically | RNAi_primary | |||
WBRNAi00111737 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00015031 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00040728 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00080823 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00049450 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00016289 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00067975 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern (12) | |||||||
Drives_construct | WBCnstr00003581 | ||||||
WBCnstr00033590 | |||||||
WBCnstr00035418 | |||||||
Construct_product | WBCnstr00033590 | ||||||
WBCnstr00035418 | |||||||
Microarray_results (46) | |||||||
Expression_cluster (207) | |||||||
Interaction (47) | |||||||
Map_info | Map | X | Position | 7.13772 | Error | 0.028432 | |
Well_ordered | |||||||
Positive | Positive_clone | F45E6 | Author_evidence | Ailion EMM | |||
H20J18 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Negative | Outside_rearr | nDf19 | |||||
Mapping_data | 2_point | 7100 | |||||
7105 | |||||||
7106 | |||||||
Multi_point | 3815 | ||||||
3816 | |||||||
3817 | |||||||
3818 | |||||||
3820 | |||||||
Pos_neg_data | 10263 | ||||||
Reference | WBPaper00004404 | ||||||
WBPaper00004925 | |||||||
WBPaper00006103 | |||||||
WBPaper00010911 | |||||||
WBPaper00017938 | |||||||
WBPaper00023261 | |||||||
WBPaper00027315 | |||||||
WBPaper00033162 | |||||||
WBPaper00033845 | |||||||
Method | Gene |