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WormBase Tree Display for Gene: WBGene00004729

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Name Class

WBGene00004729SMapS_parentSequenceCHROMOSOME_X
IdentityVersion2
NameCGC_namesax-3Person_evidenceWBPerson42
Sequence_nameZK377.2
Molecular_nameZK377.2a
ZK377.2a.1
CE25688
ZK377.2b
CE31267
ZK377.2b.1
Other_nameCELE_ZK377.2Accession_evidenceNDBBX284606
Public_namesax-3
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:36WBPerson1971EventImportedInitial conversion from geneace
202 Mar 2018 11:09:16WBPerson4025EventSplit_intoWBGene00303098
Split_intoWBGene00303098
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsax
Allele (171)
Legacy_information[Zallen JA] ky123 recessive, homozygotes exhibit aberrant anterior position of nerve ring, many ring axons misrouted, ventral nerve cord neurons often misrouted, cross midline. Encodes three isoforms, longest 1273 aa with 5 Ig repeats, 3 FNIII repeats, TM domain, large cytoplasmic domain. ky123 deletes signal sequence and first exon, probable null. Predicted gene ZK377.3 + ZK377.2
Strain (11)
RNASeq_FPKM (74)
GO_annotation (14)
OrthologWBGene00034790Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00051982Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00148619Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00128991Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00104171Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00227726Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g2329Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g12021Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g3884Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g10471Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g5898Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g8996Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g5061Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g9460Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g25465Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g16259Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00024.g1476Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_09429.g22059Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-sax-3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g23886Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g18177Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00313.g9231Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00818.g15761Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00829Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_00830Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_024104Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12222Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12223Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g8691Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0269800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g18763Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00242200Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00267281Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00302741Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0041097Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
OrthoInspector
PhylomeDB
FB:FBgn0005631Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
FB:FBgn0002543Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
PhylomeDB
ZFIN:ZDB-GENE-000209-3Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-000209-4Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-001019-1Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040426-1874Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
HGNC:10249Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
HGNC:10250Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
HGNC:13433Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
MGI:1343102Mus musculusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
MGI:1274781Mus musculusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
MGI:1890110Mus musculusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
RGD:61941Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
RGD:620167Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
RGD:1311018Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
Paralog (22)
Structured_description (2)
Disease_infoPotential_model (11)
Molecular_infoCorresponding_CDSZK377.2a
ZK377.2b
Corresponding_CDS_historyZK377.2c:wp264
Corresponding_transcriptZK377.2a.1
ZK377.2b.1
Other_sequence (32)
Associated_feature (39)
Experimental_infoRNAi_resultWBRNAi00086088Inferred_automaticallyRNAi_primary
WBRNAi00086133Inferred_automaticallyRNAi_primary
WBRNAi00009468Inferred_automaticallyRNAi_primary
WBRNAi00009467Inferred_automaticallyRNAi_primary
WBRNAi00067130Inferred_automaticallyRNAi_primary
WBRNAi00059385Inferred_automaticallyRNAi_primary
Expr_pattern (17)
Drives_constructWBCnstr00001914
WBCnstr00003185
WBCnstr00006455
WBCnstr00009445
WBCnstr00012503
WBCnstr00016209
WBCnstr00035424
WBCnstr00039977
WBCnstr00041184
Construct_product (15)
Microarray_results (28)
Expression_cluster (134)
Interaction (262)
Anatomy_functionWBbtf0177
Map_infoMapXPosition-10.3398Error0.007528
Well_ordered
PositiveInside_rearrmnDp57
Positive_cloneR06A1
ZK377Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point3695
3696
4758
Pos_neg_data9401
Reference (143)
RemarkInferred from Zallen et al. (1998)
2 predicted genes (see phenotype) have been merged. [sdm 05/00]
MethodGene