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WormBase Tree Display for Gene: WBGene00004429

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Name Class

WBGene00004429SMapS_parentSequenceY48G8AL
IdentityVersion1
NameCGC_namerpl-17
Sequence_nameY48G8AL.8
Molecular_nameY48G8AL.8
Y48G8AL.8.1
CE22195
Other_nameCELE_Y48G8AL.8Accession_evidenceNDBBX284601
Public_namerpl-17
DB_infoDatabaseAceViewgene1B631
WormQTLgeneWBGene00004429
WormFluxgeneWBGene00004429
NDBlocus_tagCELE_Y48G8AL.8
PanthergeneCAEEL|WormBase=WBGene00004429|UniProtKB=Q9BL19
familyPTHR11593
NCBIgene171692
RefSeqproteinNM_170799.7
SwissProtUniProtAccQ9BL19
UniProt_GCRPUniProtAccQ9BL19
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:35WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrpl
Allele (20)
Legacy_informationOrthologous to yeast (S.cerevisiae) ribosomal protein rpl17 using blastP
RNASeq_FPKM (74)
GO_annotation00091792
00091793
00091794
00091795
00091796
00112850
00112851
00112852
00112853
Contained_in_operonCEOP1016
Ortholog (40)
Structured_descriptionConcise_descriptionrpl-17 encodes a large ribosomal subunit L17 protein; by homology, RPL-17 is predicted to function in protein biosynthesis; in C. elegans, RPL-17 activity is required for embryonic and germline development, as well as normal postembryonic growth rates.Paper_evidenceWBPaper00005654
Curator_confirmedWBPerson1843
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL17 (ribosomal protein L17).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY48G8AL.8
Corresponding_CDS_historyY48G8AL.8b:wp253
Corresponding_transcriptY48G8AL.8.1
Other_sequence (418)
Associated_featureWBsf643044
WBsf655890
WBsf980939
WBsf217190
WBsf217191
Experimental_infoRNAi_result (23)
Expr_pattern (11)
Drives_constructWBCnstr00003552
WBCnstr00009755
WBCnstr00009756
WBCnstr00035493
Construct_productWBCnstr00035493
AntibodyWBAntibody00002468
Microarray_results (33)
Expression_clusterWBPaper00029359_1197
WBPaper00029359_1208
WBPaper00029359_1225
WBPaper00029359_1242
WBPaper00029359_1291
WBPaper00029359_1367
WBPaper00029359_1483
WBPaper00029359_1494
WBPaper00029359_1546
WBPaper00029359_1561
WBPaper00029359_1692
WBPaper00032528:L3_enriched
WBPaper00035073:mitochondria_protein
WBPaper00037047:aging_accelerated_insoluble_protein
WBPaper00037047:insoluble_protein
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00037950:PVD-OLL-neurons_larva_enriched
WBPaper00037950:PVD-OLL-neurons_larva_SelectivelyEnriched
WBPaper00038289:oocyte_protein
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00040209:B.thuringiensis_upregulated_MY18
WBPaper00040446:insoluble_protein
WBPaper00040965:lipid-droplet_associated_protein
WBPaper00041257:irradiation_downregulated
WBPaper00042552:daf-2(e1370)_downregulated_daf-16-dependent
WBPaper00043951:insoluble_protein_day16_N2
WBPaper00043951:Nascent-polypeptide-associated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00044746:aging_downregulated_Day5
WBPaper00044746:aging_downregulated_Day10
WBPaper00044746:aging_downregulated_HeatShock
WBPaper00045303:ZK1236.1(tm4178)_downregulated
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_downregulated
WBPaper00046446:rapid-synthesized_AgingAdult
WBPaper00048910:mRNA-interacting_protein
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049545:cco-1(RNAi)_downregulated
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00050412:cco-1(RNAi)_downregulated_N2
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050599:nicotine(0.01mM)_upregulated
WBPaper00050599:nicotine(1mM)_upregulated
WBPaper00050636:aging_regulated_insoluble_protein
WBPaper00050698:DEP-1_interacting
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:body-wall-muscle_cytoplasm_expressed
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:epidermis_nucleus_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
WBPaper00051555:atm-1(gk186)_regulated_protein
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053289:DREAM-target
WBPaper00053388:dauer_regulated_Cluster6
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053713:Pheromone-induced_postdauer_vs_control_downregulated
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00053814:25C_downregulated_OP50
WBPaper00055049:S.gordonii_upregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055648:germline_expressed
WBPaper00055827:daf-2(e1370)_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056826:SGP_biased
WBPaper00056900:PID-3_interacting
WBPaper00056900:TOFU-6_interacting
WBPaper00056900:TOST-1_interacting
WBPaper00057083:daf-2(e1370)rsks-1(ok1255)_post-transcriptional_downregulated
WBPaper00057288:iff-1(RNAi)_upregulated_transcript
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00058691:set-2(bn129)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00059254:CSR-1_interacting
WBPaper00059254:PRG-1_interacting
WBPaper00059328:mrps-5(RNAi)_downregulated_protein
WBPaper00059605:MUT-16_interacting
WBPaper00060459:bcat-1(RNAi)_upregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060908:TEBP-1_interacting
WBPaper00060908:TEBP-2_interacting
WBPaper00061285:wounding_24h_downregulated
WBPaper00061340:Excretory_cell
WBPaper00061340:M_cell
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061377:MYRF-1_interacting
WBPaper00061377:MYRF-2_interacting
WBPaper00061377:PAN-1_interacting
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
WBPaper00061478:SUMO-conjugated_protein
WBPaper00061527:rps-14_21270-rps-11_20714
WBPaper00061651:CAN_enriched
WBPaper00061651:Coelomocyte_enriched
WBPaper00061651:Distal_tip_cell_enriched
WBPaper00061651:Excretory_gland_cell_enriched
WBPaper00061651:Germline_enriched
WBPaper00061651:Gonadal_sheath_cell_enriched
WBPaper00061651:Intestine_enriched
WBPaper00061651:M2_enriched
WBPaper00061651:RIG_enriched
WBPaper00061651:Spermatheca_enriched
WBPaper00061902:camt-1(ok515)_regulated_RMG
WBPaper00062143:PQN-59_interacting
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062498:PPM-1.D_interacting
WBPaper00062554:MAGU-2_interacting
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064055:trl-1(cas1077)_downregulated_starved
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064201:SNA-1_interacting
WBPaper00064201:SNA-3_interacting
WBPaper00064257:UNG-1_interacting
WBPaper00064315:mes-3(bn199)_downregulated_PGCs
WBPaper00064315:mes-4(bn73)_downregulated_EGCs
WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
WBPaper00064750:0.1mg-nanoplastics_upregulated_protein
WBPaper00064750:1mg-nanoplastics_upregulated_protein
WBPaper00064750:10mg-nanoplastics_upregulated_protein
WBPaper00064789:Day6_vs_Day1_downregulated_neuron
WBPaper00064789:Day9_vs_Day1_downregulated_neuron
WBPaper00064789:Day12_vs_Day1_downregulated_neuron
WBPaper00064933:E.coli-binding_secret_protein
WBPaper00065149:lin-52(n771)_downregulated
WBPaper00065158:25C_vs_15C_downregulated_WholeAnimal
WBPaper00065373:Cisplatin_downregulated_WT
WBPaper00065623:27
WBPaper00065841:11_0
WBPaper00065945:epidermis-rpoa-2(-)_downregulated_protein
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00066085:hda-3(ok1991)_downregulated
WBPaper00066085:sin-3(syb2172)_downregulated
cgc4489_group_1
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00025032:cluster_10
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00037113:Diazinon_16C_regulated
WBPaper00040426:CYD-1_CDK-4_upregulated
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_S.marcescens_regulated
[cgc5767]:cluster_2
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(53_min)
[cgc5767]:expression_class_E_pi(66_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc6390]:Cluster_C
Interaction (304)
Map_infoMapIPosition-16.9301Error0.002606
PositivePositive_cloneY48G8ALInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00025088
WBPaper00028984
WBPaper00038491
WBPaper00049828
WBPaper00055090
WBPaper00064023
WBPaper00064339
WBPaper00064934
WBPaper00065861
Remarkrpl-17 is described as "Orthologous to yeast (S.cerevisiae) ribosomal protein rpl17 using blastP". BlastP with sp|P05740|R171_YEAST gives one hit in the genome with E < 0.01, namely to Y48G8AL.8a/bPerson_evidenceWBPerson567
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene