WormBase Tree Display for Gene: WBGene00004348
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| WBGene00004348 | SMap | S_parent | Sequence | B0336 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | rgs-5 | Person_evidence | WBPerson330 | |||||
| Sequence_name | B0336.4 | ||||||||
| Molecular_name | B0336.4a | ||||||||
| B0336.4a.1 | |||||||||
| CE32098 | |||||||||
| B0336.4b | |||||||||
| CE41974 | |||||||||
| B0336.4b.1 | |||||||||
| Other_name | CELE_B0336.4 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | rgs-5 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00004348 | |||||
| WormFlux | gene | WBGene00004348 | |||||||
| NDB | locus_tag | CELE_B0336.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004348|UniProtKB=Q10955 | |||||||
| family | PTHR13155 | ||||||||
| NCBI | gene | 175794 | |||||||
| RefSeq | protein | NM_065828.9 | |||||||
| NM_001129200.4 | |||||||||
| SwissProt | UniProtAcc | Q10955 | |||||||
| TREEFAM | TREEFAM_ID | TF105409 | |||||||
| TrEMBL | UniProtAcc | A9Z1K0 | |||||||
| UniProt_GCRP | UniProtAcc | Q10955 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 03 Dec 2004 16:35:28 | WBPerson2970 | Event | Acquires_merge | WBGene00015144 | ||||
| Acquires_merge | WBGene00015144 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rgs | ||||||||
| Allele (52) | |||||||||
| Strain | WBStrain00001317 | ||||||||
| WBStrain00001318 | |||||||||
| WBStrain00026363 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00057080 | ||||||||
| 00057081 | |||||||||
| 00057082 | |||||||||
| 00057083 | |||||||||
| Ortholog (34) | |||||||||
| Structured_description | Concise_description | rgs-5 encodes a regulator of G protein signaling; by homology, RGS-5 is predicted to function as a GTPase-activating protein that binds G protein alpha subunits and negatively regulates heterotrimeric G protein signaling; loss of rgs-5 activity via RNAi or a deletion mutation results in no obvious defects, and likewise, rgs-5 overexpression has no measurable effect on egg-laying behavior, locomotion, or viability; an rgs-5 transcriptional reporter is expressed in head neurons in larvae and adults. | Paper_evidence | WBPaper00004281 | |||||
| WBPaper00004403 | |||||||||
| WBPaper00004651 | |||||||||
| WBPaper00005654 | |||||||||
| WBPaper00024480 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 07 Feb 2005 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in protein localization. Predicted to be located in mitochondrion and plasma membrane. Is an ortholog of human AKAP10 (A-kinase anchoring protein 10). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0336.4a | |||||||
| B0336.4b | |||||||||
| Corresponding_CDS_history | B0336.4:wp87 | ||||||||
| B0336.4:wp186 | |||||||||
| Corresponding_transcript | B0336.4a.1 | ||||||||
| B0336.4b.1 | |||||||||
| Other_sequence (14) | |||||||||
| Associated_feature | WBsf645199 | ||||||||
| WBsf658519 | |||||||||
| WBsf992493 | |||||||||
| WBsf1014937 | |||||||||
| WBsf224982 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00009713 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00038946 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000525 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005083 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085057 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028096 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram860 | ||||||||
| Chronogram1453 | |||||||||
| Expr5057 | |||||||||
| Expr1010499 | |||||||||
| Expr1032166 | |||||||||
| Expr1143126 | |||||||||
| Expr2015328 | |||||||||
| Expr2033562 | |||||||||
| Drives_construct | WBCnstr00002210 | ||||||||
| WBCnstr00002211 | |||||||||
| WBCnstr00035549 | |||||||||
| Construct_product | WBCnstr00035549 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (91) | |||||||||
| Interaction | WBInteraction000161534 | ||||||||
| WBInteraction000194562 | |||||||||
| WBInteraction000259244 | |||||||||
| WBInteraction000263286 | |||||||||
| WBInteraction000288157 | |||||||||
| WBInteraction000336818 | |||||||||
| WBInteraction000368525 | |||||||||
| WBInteraction000422042 | |||||||||
| WBInteraction000423609 | |||||||||
| WBInteraction000436719 | |||||||||
| Map_info | Map | III | Position | -1.45152 | Error | 0.000561 | |||
| Positive | Positive_clone | B0336 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5049 | |||||||
| 5250 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004281 | ||||||||
| WBPaper00011274 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
