WormBase Tree Display for Gene: WBGene00004348
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WBGene00004348 | SMap | S_parent | Sequence | B0336 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | rgs-5 | Person_evidence | WBPerson330 | |||
Sequence_name | B0336.4 | ||||||
Molecular_name | B0336.4a | ||||||
B0336.4a.1 | |||||||
CE32098 | |||||||
B0336.4b | |||||||
CE41974 | |||||||
B0336.4b.1 | |||||||
Other_name | CELE_B0336.4 | Accession_evidence | NDB | BX284603 | |||
Public_name | rgs-5 | ||||||
DB_info | Database | WormQTL | gene | WBGene00004348 | |||
WormFlux | gene | WBGene00004348 | |||||
NDB | locus_tag | CELE_B0336.4 | |||||
Panther | gene | CAEEL|WormBase=WBGene00004348|UniProtKB=Q10955 | |||||
family | PTHR13155 | ||||||
NCBI | gene | 175794 | |||||
RefSeq | protein | NM_065828.9 | |||||
NM_001129200.4 | |||||||
SwissProt | UniProtAcc | Q10955 | |||||
TREEFAM | TREEFAM_ID | TF105409 | |||||
TrEMBL | UniProtAcc | A9Z1K0 | |||||
UniProt_GCRP | UniProtAcc | Q10955 | |||||
Species | Caenorhabditis elegans | ||||||
History (2) | |||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | rgs | ||||||
Allele (52) | |||||||
Strain | WBStrain00001317 | ||||||
WBStrain00001318 | |||||||
WBStrain00026363 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00057080 | ||||||
00057081 | |||||||
00057082 | |||||||
00057083 | |||||||
Ortholog (34) | |||||||
Structured_description | Concise_description | rgs-5 encodes a regulator of G protein signaling; by homology, RGS-5 is predicted to function as a GTPase-activating protein that binds G protein alpha subunits and negatively regulates heterotrimeric G protein signaling; loss of rgs-5 activity via RNAi or a deletion mutation results in no obvious defects, and likewise, rgs-5 overexpression has no measurable effect on egg-laying behavior, locomotion, or viability; an rgs-5 transcriptional reporter is expressed in head neurons in larvae and adults. | Paper_evidence | WBPaper00004281 | |||
WBPaper00004403 | |||||||
WBPaper00004651 | |||||||
WBPaper00005654 | |||||||
WBPaper00024480 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 07 Feb 2005 00:00:00 | ||||||
Automated_description | Predicted to be involved in protein localization. Predicted to be located in mitochondrion and plasma membrane. Is an ortholog of human AKAP10 (A-kinase anchoring protein 10). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | B0336.4a | |||||
B0336.4b | |||||||
Corresponding_CDS_history | B0336.4:wp87 | ||||||
B0336.4:wp186 | |||||||
Corresponding_transcript | B0336.4a.1 | ||||||
B0336.4b.1 | |||||||
Other_sequence (14) | |||||||
Associated_feature | WBsf645199 | ||||||
WBsf658519 | |||||||
WBsf992493 | |||||||
WBsf1014937 | |||||||
WBsf224982 | |||||||
Experimental_info | RNAi_result | WBRNAi00009713 | Inferred_automatically | RNAi_primary | |||
WBRNAi00038946 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00000525 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00005083 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00085057 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00028096 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Chronogram860 | ||||||
Chronogram1453 | |||||||
Expr5057 | |||||||
Expr1010499 | |||||||
Expr1032166 | |||||||
Expr1143126 | |||||||
Expr2015328 | |||||||
Expr2033562 | |||||||
Drives_construct | WBCnstr00002210 | ||||||
WBCnstr00002211 | |||||||
WBCnstr00035549 | |||||||
Construct_product | WBCnstr00035549 | ||||||
Microarray_results (22) | |||||||
Expression_cluster (91) | |||||||
Interaction | WBInteraction000161534 | ||||||
WBInteraction000194562 | |||||||
WBInteraction000259244 | |||||||
WBInteraction000263286 | |||||||
WBInteraction000288157 | |||||||
WBInteraction000336818 | |||||||
WBInteraction000368525 | |||||||
WBInteraction000422042 | |||||||
WBInteraction000423609 | |||||||
WBInteraction000436719 | |||||||
Map_info | Map | III | Position | -1.45152 | Error | 0.000561 | |
Positive | Positive_clone | B0336 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 5049 | |||||
5250 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00004281 | ||||||
WBPaper00011274 | |||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |