WormBase Tree Display for Gene: WBGene00004196

WBGene00004196 Evidence: Paper_evidence: WBPaper00005877
  SMap: S_parent: Sequence: C47B2
  Identity: Version: 1
    Name: CGC_name: prx-11
      Sequence_name: C47B2.8
      Molecular_name: C47B2.8
        C47B2.8.1
        CE17569
      Other_name: CELE_C47B2.8 Accession_evidence: NDB BX284601
      Public_name: prx-11
    DB_info: Database: AceView gene 1N563
        WormQTL gene WBGene00004196
        WormFlux gene WBGene00004196
        NDB locus_tag CELE_C47B2.8
        Panther gene CAEEL|WormBase=WBGene00004196|UniProtKB=O62103
          family PTHR20990
        NCBI gene 353387
        RefSeq protein NM_060872.3
        TREEFAM TREEFAM_ID TF316770
        TrEMBL UniProtAcc O62103
        UniProt_GCRP UniProtAcc O62103
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:34 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: prx
    Allele (36)
    RNASeq_FPKM (74)
    GO_annotation: 00036964
      00036965
      00036966
      00036967
      00036968
      00036969
      00036970
      00036971
      00112470
      00112471
    Contained_in_operon: CEOP1988
    Ortholog (27)
    Structured_description: Concise_description: prx-11 encodes the C. elegans ortholog of vertebrate peroxisomal membrane protein 11C; by homology, PRX-11 is predicted to be an integral peroxisomal membrane protein that functions in peroxisome organization; loss of prx-11 activity results in an extended lifespan and increased sensitivity to the Pseudomonas aeruginosa pathogen. Paper_evidence: WBPaper00040988
            WBPaper00028482
            WBPaper00005877
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Apr 2014 00:00:00
      Automated_description: Involved in defense response to Gram-negative bacterium and innate immune response. Predicted to be located in peroxisomal membrane. Is an ortholog of human PEX11G (peroxisomal biogenesis factor 11 gamma). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C47B2.8
    Corresponding_transcript: C47B2.8.1
    Other_sequence (27)
    Associated_feature: WBsf985742
      WBsf1010999
      WBsf218665
  Experimental_info: RNAi_result: WBRNAi00042655 Inferred_automatically: RNAi_primary
      WBRNAi00029899 Inferred_automatically: RNAi_primary
      WBRNAi00111511 Inferred_automatically: RNAi_primary
      WBRNAi00111507 Inferred_automatically: RNAi_primary
      WBRNAi00065090 Inferred_automatically: RNAi_primary
      WBRNAi00111515 Inferred_automatically: RNAi_primary
      WBRNAi00042656 Inferred_automatically: RNAi_primary
      WBRNAi00003178 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram162
      Expr5527
      Expr7476
      Expr1023139
      Expr1146643
      Expr2015119
      Expr2033357
    Drives_construct: WBCnstr00003726
      WBCnstr00012620
    Microarray_results (18)
    Expression_cluster (139)
    Interaction: WBInteraction000215781
      WBInteraction000256439
      WBInteraction000298520
  Map_info: Map: I Position: 16.8043 Error: 0.003102
    Positive: Positive_clone: C47B2 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005877
    WBPaper00006465
    WBPaper00028482
    WBPaper00038491
    WBPaper00055090
    WBPaper00059191
    WBPaper00059323
    WBPaper00062224
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene