WormBase Tree Display for Gene: WBGene00004196
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| WBGene00004196 | Evidence | Paper_evidence | WBPaper00005877 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C47B2 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | prx-11 | |||||||
| Sequence_name | C47B2.8 | ||||||||
| Molecular_name | C47B2.8 | ||||||||
| C47B2.8.1 | |||||||||
| CE17569 | |||||||||
| Other_name | CELE_C47B2.8 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | prx-11 | ||||||||
| DB_info | Database | AceView | gene | 1N563 | |||||
| WormQTL | gene | WBGene00004196 | |||||||
| WormFlux | gene | WBGene00004196 | |||||||
| NDB | locus_tag | CELE_C47B2.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004196|UniProtKB=O62103 | |||||||
| family | PTHR20990 | ||||||||
| NCBI | gene | 353387 | |||||||
| RefSeq | protein | NM_060872.3 | |||||||
| TREEFAM | TREEFAM_ID | TF316770 | |||||||
| TrEMBL | UniProtAcc | O62103 | |||||||
| UniProt_GCRP | UniProtAcc | O62103 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | prx | ||||||||
| Allele | WBVar02158696 | ||||||||
| WBVar02158702 | |||||||||
| WBVar02158726 | |||||||||
| WBVar02158727 | |||||||||
| WBVar02158728 | |||||||||
| WBVar02158734 | |||||||||
| WBVar02158735 | |||||||||
| WBVar02158701 | |||||||||
| WBVar02158703 | |||||||||
| WBVar02158705 | |||||||||
| WBVar02158707 | |||||||||
| WBVar02158711 | |||||||||
| WBVar02158713 | |||||||||
| WBVar02158714 | |||||||||
| WBVar02158715 | |||||||||
| WBVar02158717 | |||||||||
| WBVar02158718 | |||||||||
| WBVar02158719 | |||||||||
| WBVar02158720 | |||||||||
| WBVar02158722 | |||||||||
| WBVar02158723 | |||||||||
| WBVar02158724 | |||||||||
| WBVar02158729 | |||||||||
| WBVar02158732 | |||||||||
| WBVar02158733 | |||||||||
| WBVar01499739 | |||||||||
| WBVar01495697 | |||||||||
| WBVar00682398 | |||||||||
| WBVar00682399 | |||||||||
| WBVar00682400 | |||||||||
| WBVar00682401 | |||||||||
| WBVar00682402 | |||||||||
| WBVar00682403 | |||||||||
| WBVar01499999 | |||||||||
| WBVar00160092 | |||||||||
| WBVar00349355 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00036964 | ||||||||
| 00036965 | |||||||||
| 00036966 | |||||||||
| 00036967 | |||||||||
| 00036968 | |||||||||
| 00036969 | |||||||||
| 00036970 | |||||||||
| 00036971 | |||||||||
| 00112470 | |||||||||
| 00112471 | |||||||||
| Contained_in_operon | CEOP1988 | ||||||||
| Ortholog (27) | |||||||||
| Structured_description | Concise_description | prx-11 encodes the C. elegans ortholog of vertebrate peroxisomal membrane protein 11C; by homology, PRX-11 is predicted to be an integral peroxisomal membrane protein that functions in peroxisome organization; loss of prx-11 activity results in an extended lifespan and increased sensitivity to the Pseudomonas aeruginosa pathogen. | Paper_evidence | WBPaper00040988 | |||||
| WBPaper00028482 | |||||||||
| WBPaper00005877 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Apr 2014 00:00:00 | ||||||||
| Automated_description | Involved in defense response to Gram-negative bacterium and innate immune response. Predicted to be located in peroxisomal membrane. Is an ortholog of human PEX11G (peroxisomal biogenesis factor 11 gamma). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C47B2.8 | |||||||
| Corresponding_transcript | C47B2.8.1 | ||||||||
| Other_sequence (27) | |||||||||
| Associated_feature | WBsf985742 | ||||||||
| WBsf1010999 | |||||||||
| WBsf218665 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00042655 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00029899 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111511 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111507 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065090 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111515 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042656 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003178 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram162 | ||||||||
| Expr5527 | |||||||||
| Expr7476 | |||||||||
| Expr1023139 | |||||||||
| Expr1146643 | |||||||||
| Expr2015119 | |||||||||
| Expr2033357 | |||||||||
| Drives_construct | WBCnstr00003726 | ||||||||
| WBCnstr00012620 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (139) | |||||||||
| Interaction | WBInteraction000215781 | ||||||||
| WBInteraction000256439 | |||||||||
| WBInteraction000298520 | |||||||||
| Map_info | Map | I | Position | 16.8043 | Error | 0.003102 | |||
| Positive | Positive_clone | C47B2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005877 | ||||||||
| WBPaper00006465 | |||||||||
| WBPaper00028482 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059191 | |||||||||
| WBPaper00059323 | |||||||||
| WBPaper00062224 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
