WormBase Tree Display for Gene: WBGene00004189
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WBGene00004189 | SMap | S_parent | Sequence | T20H4 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | pars-1 | Person_evidence | WBPerson36 | |||
WBPerson10953 | |||||||
Sequence_name | T20H4.3 | ||||||
Molecular_name | T20H4.3a | ||||||
T20H4.3a.1 | |||||||
CE00748 | |||||||
T20H4.3b | |||||||
CE37410 | |||||||
T20H4.3b.1 | |||||||
Other_name | prs-1 | ||||||
CELE_T20H4.3 | Accession_evidence | NDB | BX284603 | ||||
Public_name | pars-1 | ||||||
DB_info | Database (13) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | pars | ||||||
Allele (15) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (16) | |||||||
Ortholog (36) | |||||||
Paralog | WBGene00000659 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WBGene00001337 | Caenorhabditis elegans | From_analysis | Panther | ||||
WBGene00004190 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00006617 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00044344 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | prs-1 encodes a predicted cytoplasmic prolyl-tRNA synthetase (ProRS), a class II aminoacyl-tRNA synthetase that catalyzes the attachment of proline to its cognate tRNA and is thus required for protein biosynthesis; PRS-1 is required for embryonic, germline, and postembryonic development. | Paper_evidence | WBPaper00004403 | |||
WBPaper00004651 | |||||||
WBPaper00005654 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable proline-tRNA ligase activity. Predicted to be involved in prolyl-tRNA aminoacylation. Predicted to be located in cytoplasm. Predicted to be part of aminoacyl-tRNA synthetase multienzyme complex. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 15. Is an ortholog of human EPRS1 (glutamyl-prolyl-tRNA synthetase 1). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0070398 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3418) | ||
Molecular_info | Corresponding_CDS | T20H4.3a | |||||
T20H4.3b | |||||||
Corresponding_CDS_history | T20H4.3:wp130 | ||||||
Corresponding_transcript | T20H4.3a.1 | ||||||
T20H4.3b.1 | |||||||
Other_sequence (103) | |||||||
Associated_feature (12) | |||||||
Experimental_info | RNAi_result (17) | ||||||
Expr_pattern | Expr1028773 | ||||||
Expr1032049 | |||||||
Expr1157227 | |||||||
Expr2014738 | |||||||
Expr2032972 | |||||||
Drives_construct | WBCnstr00037929 | ||||||
Construct_product | WBCnstr00037929 | ||||||
Microarray_results (24) | |||||||
Expression_cluster (112) | |||||||
Interaction (277) | |||||||
Map_info | Map | III | Position | -0.766312 | Error | 0.000666 | |
Positive | Positive_clone | T20H4 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00035228 | ||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
WBPaper00057218 | |||||||
Remark | Connection made from predicted gene which has synthetase Pfam domain similarity. [sdm 12/01] | ||||||
dl1 : porbably cytoplasmic | |||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |