WormBase Tree Display for Gene: WBGene00003969
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| WBGene00003969 | SMap | S_parent | Sequence | F23H11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pef-1 | |||||||
| Sequence_name | F23H11.8 | ||||||||
| Molecular_name | F23H11.8a | ||||||||
| F23H11.8a.1 | |||||||||
| CE27999 | |||||||||
| F23H11.8b | |||||||||
| CE30662 | |||||||||
| F23H11.8c | |||||||||
| CE43732 | |||||||||
| F23H11.8b.1 | |||||||||
| F23H11.8b.2 | |||||||||
| F23H11.8c.1 | |||||||||
| Other_name | CELE_F23H11.8 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | pef-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pef | ||||||||
| Allele (265) | |||||||||
| Strain | WBStrain00032302 | ||||||||
| WBStrain00047611 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (24) | |||||||||
| Contained_in_operon | CEOP3805 | ||||||||
| Ortholog (42) | |||||||||
| Paralog (44) | |||||||||
| Structured_description | Concise_description | pef-1 encodes an ortholog of the rhodopsin-specific serine/threonine phosphatase RdgC in D. melanogaster and of RdgC-related proteins in humans (PPEF1 and PPEF2; OMIM:300109 and OMIM:602256); PEF-1 has a EF-hand calcium-binding domain, and is peripherally bound to the plasma membrane by myristoylation and palmitoylation; pef-1 has no known mutant phenotype, but is expressed in several anterior amphid neurons, from what appears to be the 3-fold embryo stage onward; on the basis of its expression and its orthology, PEF-1 may negatively regulate signalling through serpentine receptors such as STR-2. | Paper_evidence | WBPaper00004766 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in detection of stimulus involved in sensory perception. Located in neuronal cell body. Expressed in hypodermis; intestinal cell; muscle cell; and neurons. Is an ortholog of human PPEF1 (protein phosphatase with EF-hand domain 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F23H11.8a | |||||||
| F23H11.8b | |||||||||
| F23H11.8c | |||||||||
| Corresponding_transcript | F23H11.8a.1 | ||||||||
| F23H11.8b.1 | |||||||||
| F23H11.8b.2 | |||||||||
| F23H11.8c.1 | |||||||||
| Other_sequence (26) | |||||||||
| Associated_feature | WBsf666552 | ||||||||
| WBsf991188 | |||||||||
| WBsf226159 | |||||||||
| WBsf226160 | |||||||||
| WBsf226161 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00045447 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00006514 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115957 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013834 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1500 | ||||||||
| Expr2115 | |||||||||
| Expr1020293 | |||||||||
| Expr1031893 | |||||||||
| Expr1149366 | |||||||||
| Expr2014817 | |||||||||
| Expr2033051 | |||||||||
| Drives_construct | WBCnstr00010314 | ||||||||
| WBCnstr00035766 | |||||||||
| Construct_product | WBCnstr00035766 | ||||||||
| Antibody | WBAntibody00000387 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (146) | |||||||||
| Interaction (17) | |||||||||
| Map_info | Map | III | Position | -25.0941 | Error | 0.017637 | |||
| Positive | Positive_clone | F23H11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5654 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004766 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
