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WormBase Tree Display for Gene: WBGene00003959

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Name Class

WBGene00003959SMapS_parentSequenceY116F11B
IdentityVersion1
NameCGC_namepcp-4Person_evidenceWBPerson564
Sequence_nameY116F11B.3
Molecular_nameY116F11B.3
Y116F11B.3.1
CE26048
Y116F11B.3.2
Other_nameCELE_Y116F11B.3Accession_evidenceNDBBX284605
Public_namepcp-4
DB_infoDatabaseAceViewgene5U292
WormQTLgeneWBGene00003959
WormFluxgeneWBGene00003959
NDBlocus_tagCELE_Y116F11B.3
PanthergeneCAEEL|WormBase=WBGene00003959|UniProtKB=Q9GRV9
familyPTHR11010
NCBIgene180301
RefSeqproteinNM_075440.8
TREEFAMTREEFAM_IDTF314855
TrEMBLUniProtAccQ9GRV9
UniProt_GCRPUniProtAccQ9GRV9
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:33WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpcp
Allele (235)
In_clusterconserved_RDE-1_cluster
RNASeq_FPKM (74)
GO_annotation00092244
00092245
00092246
00092247
00092248
00112073
00112074
OrthologWBGene00040481Caenorhabditis briggsaeFrom_analysisOrthoMCL
WormBase-Compara
WBGene00040482Caenorhabditis briggsaeFrom_analysisOrthoMCL
WormBase-Compara
WBGene00063913Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00073283Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00147146Caenorhabditis brenneriFrom_analysisWormBase-Compara
CBOVI.g8144Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1473Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g14493Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g14494Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g19254Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g19268Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g19269Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g19270Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g4032Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g4034Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g26713Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12346Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g11709Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g17030Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g12724Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g12725Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00144.g5535Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_16107.g25260Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_20197.g26412Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_IV.g13002Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_IV.g13003Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g9642Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02167.g25200Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_02167.g25201Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_02167.g25202Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_02167.g25203Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_03849.g31425Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_16567Caenorhabditis latensFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02776Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g574Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30189610Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_30191100Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_30192300Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g17970Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00124773Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00127957Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00218221Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00063915Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00073802Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00091704Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00092526Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00093728Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00106226Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00277655Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00278673Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00280488Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00281123Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00283839Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00283840Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00284511Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00259373Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00266297Strongyloides rattiFrom_analysisWormBase-Compara
FB:FBgn0035726Drosophila melanogasterFrom_analysisOrthoFinder
Panther
PhylomeDB
ZFIN:ZDB-GENE-070112-732Danio rerioFrom_analysisOrthoFinder
Panther
PhylomeDB
HGNC:9480Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
MGI:1859181Mus musculusFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
RGD:1306652Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
ParalogWBGene00003956Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003957Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00003958Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00016134Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017592Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00022801Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00019682Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00018984Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017594Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00044302Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionAutomated_descriptionPredicted to enable dipeptidyl-peptidase activity. Predicted to be involved in proteolysis. Located in membrane raft. Is an ortholog of human PRSS16 (serine protease 16).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY116F11B.3
Corresponding_transcriptY116F11B.3.1
Y116F11B.3.2
Other_sequenceACC24777_1
MA02984
HCC04047
EX540882.1
EX563930.1
HC01381
Associated_featureWBsf1003362
WBsf1021820
Experimental_infoRNAi_resultWBRNAi00055482Inferred_automaticallyRNAi_primary
Expr_patternExpr1013824
Expr1158989
Expr2014786
Expr2033020
Microarray_results (17)
Expression_cluster (228)
InteractionWBInteraction000552878
Map_infoMapVPosition23.5421Error0.004665
PositivePositive_cloneY116F11BInferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00029226
WBPaper00037777
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene