WormBase Tree Display for Gene: WBGene00003957
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| WBGene00003957 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pcp-2 | Person_evidence | WBPerson564 | |||||
| Sequence_name | F23B2.12 | ||||||||
| Molecular_name | F23B2.12 | ||||||||
| F23B2.12.1 | |||||||||
| CE09592 | |||||||||
| Other_name | CELE_F23B2.12 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | pcp-2 | ||||||||
| DB_info | Database | AceView | gene | 4J926 | |||||
| WormQTL | gene | WBGene00003957 | |||||||
| WormFlux | gene | WBGene00003957 | |||||||
| NDB | locus_tag | CELE_F23B2.12 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003957|UniProtKB=G5EFJ8 | |||||||
| family | PTHR11010 | ||||||||
| NCBI | gene | 177741 | |||||||
| RefSeq | protein | NM_069198.6 | |||||||
| TREEFAM | TREEFAM_ID | TF314855 | |||||||
| TrEMBL | UniProtAcc | G5EFJ8 | |||||||
| UniProt_GCRP | UniProtAcc | G5EFJ8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pcp | ||||||||
| Allele (62) | |||||||||
| In_cluster | conserved_RDE-1_cluster | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00018287 | ||||||||
| 00018288 | |||||||||
| 00018289 | |||||||||
| 00018290 | |||||||||
| 00018291 | |||||||||
| 00112069 | |||||||||
| 00112070 | |||||||||
| Ortholog (57) | |||||||||
| Paralog | WBGene00003956 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00016134 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017592 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022801 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00019682 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00018984 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017594 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003958 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003959 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00044302 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | pcp-2 encodes a prolyl carboxypeptidase. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 14 Oct 2013 00:00:00 | ||||||||
| Automated_description | Predicted to enable dipeptidyl-peptidase activity. Predicted to be involved in proteolysis. Located in membrane raft. Is an ortholog of human PRSS16 (serine protease 16). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F23B2.12 | |||||||
| Corresponding_transcript | F23B2.12.1 | ||||||||
| Other_sequence (58) | |||||||||
| Associated_feature | WBsf652040 | ||||||||
| WBsf718154 | |||||||||
| WBsf230520 | |||||||||
| WBsf230521 | |||||||||
| WBsf230522 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00115958 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00045388 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00089053 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013802 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031310 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016805 | ||||||||
| Expr1149311 | |||||||||
| Expr2014784 | |||||||||
| Expr2033018 | |||||||||
| Drives_construct | WBCnstr00035775 | ||||||||
| Construct_product | WBCnstr00035775 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (297) | |||||||||
| Interaction (47) | |||||||||
| Map_info | Map | IV | Position | 4.10071 | Error | 0.003745 | |||
| Positive | Positive_clone | F23B2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031095 | ||||||||
| WBPaper00037777 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065759 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
