WormBase Tree Display for Gene: WBGene00003952
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| WBGene00003952 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C02F5 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | pbs-6 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | C02F5.9 | ||||||||
| Molecular_name | C02F5.9 | ||||||||
| C02F5.9.1 | |||||||||
| CE26745 | |||||||||
| Other_name | 3I332 | Accession_evidence | EMBL | AF303265 | |||||
| CELE_C02F5.9 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | pbs-6 | ||||||||
| DB_info | Database | AceView | gene | 3J332 | |||||
| WormQTL | gene | WBGene00003952 | |||||||
| WormFlux | gene | WBGene00003952 | |||||||
| NDB | locus_tag | CELE_C02F5.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003952|UniProtKB=P34286 | |||||||
| family | PTHR11599 | ||||||||
| NCBI | gene | 176161 | |||||||
| RefSeq | protein | NM_066405.5 | |||||||
| SwissProt | UniProtAcc | P34286 | |||||||
| TREEFAM | TREEFAM_ID | TF106218 | |||||||
| UniProt_GCRP | UniProtAcc | P34286 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pbs | ||||||||
| Allele (18) | |||||||||
| Strain | WBStrain00036983 | ||||||||
| WBStrain00036996 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (36) | |||||||||
| Paralog (13) | |||||||||
| Structured_description | Concise_description | The pbs-6 gene encodes a homolog of mammalian PSMB1. | Paper_evidence | WBPaper00004588 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in proteasomal protein catabolic process. Predicted to be located in nucleus. Predicted to be part of proteasome core complex, beta-subunit complex. Expressed in pharynx. Is an ortholog of human PSMB1 (proteasome 20S subunit beta 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C02F5.9 | |||||||
| Corresponding_transcript | C02F5.9.1 | ||||||||
| Other_sequence (72) | |||||||||
| Associated_feature | WBsf651257 | ||||||||
| WBsf667143 | |||||||||
| WBsf667144 | |||||||||
| WBsf667145 | |||||||||
| WBsf667146 | |||||||||
| WBsf227099 | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr3879 | ||||||||
| Expr1010549 | |||||||||
| Expr1031878 | |||||||||
| Expr1143569 | |||||||||
| Expr2014770 | |||||||||
| Expr2033004 | |||||||||
| Drives_construct | WBCnstr00011711 | ||||||||
| WBCnstr00035780 | |||||||||
| Construct_product | WBCnstr00035780 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (137) | |||||||||
| Interaction (200) | |||||||||
| Map_info | Map | III | Position | -0.354369 | Error | 0.00031 | |||
| Positive | Positive_clone | C02F5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004588 | ||||||||
| WBPaper00029221 | |||||||||
| WBPaper00030965 | |||||||||
| WBPaper00035228 | |||||||||
| WBPaper00036083 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041601 | |||||||||
| WBPaper00045571 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056008 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
