WormBase Tree Display for Gene: WBGene00003924
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| WBGene00003924 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y110A7A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | pas-3 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | Y110A7A.14 | ||||||||
| Molecular_name | Y110A7A.14 | ||||||||
| Y110A7A.14.1 | |||||||||
| CE30307 | |||||||||
| Other_name | CELE_Y110A7A.14 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | pas-3 | ||||||||
| DB_info | Database | AceView | gene | 1F674 | |||||
| WormQTL | gene | WBGene00003924 | |||||||
| WormFlux | gene | WBGene00003924 | |||||||
| NDB | locus_tag | CELE_Y110A7A.14 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003924|UniProtKB=Q9N599 | |||||||
| family | PTHR11599 | ||||||||
| NCBI | gene | 172139 | |||||||
| RefSeq | protein | NM_001392262.1 | |||||||
| SwissProt | UniProtAcc | Q9N599 | |||||||
| TREEFAM | TREEFAM_ID | TF106209 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N599 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pas | ||||||||
| Allele | WBVar02146649 | ||||||||
| WBVar00636136 | |||||||||
| WBVar00636137 | |||||||||
| WBVar00636138 | |||||||||
| WBVar00333786 | |||||||||
| WBVar00333787 | |||||||||
| WBVar01499786 | |||||||||
| WBVar01498959 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Contained_in_operon | CEOP1216 | ||||||||
| Ortholog (35) | |||||||||
| Paralog (13) | |||||||||
| Structured_description | Concise_description | pas-3 encodes a proteasome subunit alpha type-4 that affects embryonic viability, growth, fertility, and locomotion. | Paper_evidence | WBPaper00004402 | |||||
| WBPaper00006395 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 09 Nov 2011 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in proteasomal protein catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be part of proteasome core complex, alpha-subunit complex. Is an ortholog of human PSMA4 (proteasome 20S subunit alpha 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y110A7A.14 | |||||||
| Corresponding_transcript | Y110A7A.14.1 | ||||||||
| Other_sequence (116) | |||||||||
| Associated_feature | WBsf649139 | ||||||||
| WBsf219369 | |||||||||
| Experimental_info | RNAi_result (27) | ||||||||
| Expr_pattern | Expr1014892 | ||||||||
| Expr1031857 | |||||||||
| Expr1158855 | |||||||||
| Expr2014742 | |||||||||
| Expr2032976 | |||||||||
| Drives_construct | WBCnstr00035794 | ||||||||
| Construct_product | WBCnstr00035794 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (144) | |||||||||
| Interaction (171) | |||||||||
| Map_info | Map | I | Position | -0.41002 | Error | 0.00058 | |||
| Positive | Positive_clone | Y110A7A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031224 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00048675 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056008 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
