WormBase Tree Display for Gene: WBGene00003835
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| WBGene00003835 | SMap | S_parent | Sequence | C15H11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nxf-2 | |||||||
| Sequence_name | C15H11.6 | ||||||||
| Molecular_name | C15H11.6 | ||||||||
| C15H11.6.1 | |||||||||
| CE36102 | |||||||||
| Other_name | nfx-2 | Paper_evidence | WBPaper00041879 | ||||||
| CELE_C15H11.6 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | nxf-2 | ||||||||
| DB_info | Database | AceView | gene | 5O896 | |||||
| WormQTL | gene | WBGene00003835 | |||||||
| WormFlux | gene | WBGene00003835 | |||||||
| NDB | locus_tag | CELE_C15H11.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003835|UniProtKB=Q9XVS8 | |||||||
| family | PTHR10662 | ||||||||
| NCBI | gene | 179938 | |||||||
| RefSeq | protein | NM_074167.8 | |||||||
| SwissProt | UniProtAcc | Q9XVS8 | |||||||
| TREEFAM | TREEFAM_ID | TF314566 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XVS8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nxf | ||||||||
| Allele (39) | |||||||||
| Strain | WBStrain00031518 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00102819 | ||||||||
| 00102820 | |||||||||
| 00102821 | |||||||||
| 00102822 | |||||||||
| 00102823 | |||||||||
| 00102824 | |||||||||
| 00102825 | |||||||||
| 00102826 | |||||||||
| 00102827 | |||||||||
| Ortholog (47) | |||||||||
| Paralog | WBGene00003834 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | nxf-2 encodes a predicted homolog of human TAP protein, a member of the NXF family of shuttling transport receptors for nuclear export of mRNA, and it affects embryonic viability. | Paper_evidence | WBPaper00004473 | |||||
| WBPaper00004540 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be located in nucleus. Expressed in germ cell. Is an ortholog of several human genes including NXF1 (nuclear RNA export factor 1); NXF2 (nuclear RNA export factor 2); and NXF3 (nuclear RNA export factor 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C15H11.6 | |||||||
| Corresponding_CDS_history | C15H11.6:wp114 | ||||||||
| Corresponding_transcript | C15H11.6.1 | ||||||||
| Other_sequence | JI167486.1 | ||||||||
| CR01563 | |||||||||
| JI168580.1 | |||||||||
| CRC03676_1 | |||||||||
| JI171544.1 | |||||||||
| Associated_feature | WBsf653381 | ||||||||
| WBsf234940 | |||||||||
| WBsf234941 | |||||||||
| WBsf234942 | |||||||||
| WBsf234943 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00010798 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00092209 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040621 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007826 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028926 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11968 | ||||||||
| Expr16240 | |||||||||
| Expr16241 | |||||||||
| Expr1023865 | |||||||||
| Expr1031808 | |||||||||
| Expr1144679 | |||||||||
| Expr2014535 | |||||||||
| Expr2032774 | |||||||||
| Drives_construct | WBCnstr00035844 | ||||||||
| WBCnstr00042853 | |||||||||
| WBCnstr00042854 | |||||||||
| Construct_product | WBCnstr00019837 | ||||||||
| WBCnstr00035844 | |||||||||
| WBCnstr00042854 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (124) | |||||||||
| Interaction (282) | |||||||||
| Map_info | Map | V | Position | 6.29176 | Error | 0.002671 | |||
| Positive | Positive_clone | C15H11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4552 | |||||||
| 4553 | |||||||||
| 5277 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004473 | ||||||||
| WBPaper00004540 | |||||||||
| WBPaper00012528 | |||||||||
| WBPaper00013477 | |||||||||
| WBPaper00024231 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040491 | |||||||||
| WBPaper00041879 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064359 | |||||||||
| Remark | Sequence connection from [source BK Felber] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Please note that this publication erreneously cited nfx-2. The correct gene is nxf-2. | Paper_evidence | WBPaper00041879 | |||||||
| Method | Gene |
