WormBase Tree Display for Gene: WBGene00003834
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| WBGene00003834 | SMap | S_parent | Sequence | C15H11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nxf-1 | |||||||
| Sequence_name | C15H11.3 | ||||||||
| Molecular_name | C15H11.3 | ||||||||
| C15H11.3.1 | |||||||||
| CE42865 | |||||||||
| Other_name | nfx-1 | Paper_evidence | WBPaper00041879 | ||||||
| CELE_C15H11.3 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | nxf-1 | ||||||||
| DB_info | Database | AceView | gene | 5O892 | |||||
| WormQTL | gene | WBGene00003834 | |||||||
| WormFlux | gene | WBGene00003834 | |||||||
| NDB | locus_tag | CELE_C15H11.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003834|UniProtKB=Q9XVS7 | |||||||
| family | PTHR10662 | ||||||||
| NCBI | gene | 191736 | |||||||
| RefSeq | protein | NM_001136408.4 | |||||||
| TrEMBL | UniProtAcc | B5BM32 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nxf | ||||||||
| Allele (69) | |||||||||
| Possibly_affected_by | WBVar02158628 | ||||||||
| WBVar02158629 | |||||||||
| WBVar02158630 | |||||||||
| Strain | WBStrain00029007 | ||||||||
| WBStrain00029025 | |||||||||
| WBStrain00031518 | |||||||||
| WBStrain00031946 | |||||||||
| WBStrain00047293 | |||||||||
| WBStrain00047294 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (50) | |||||||||
| Paralog | WBGene00003835 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | nxf-1 encodes a homolog of human TAP protein, a member of the NXF family of shuttling transport receptors for nuclear export of mRNA; binds RNA directly and its function has been shown to be conserved with the NXF family. | Paper_evidence | WBPaper00004473 | |||||
| WBPaper00005959 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in mRNA export from nucleus. Located in nuclear envelope; nucleolus; and nucleoplasm. Part of nuclear pore. Is an ortholog of human NXF1 (nuclear RNA export factor 1); NXF2 (nuclear RNA export factor 2); and NXF2B (nuclear RNA export factor 2B). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C15H11.3 | |||||||
| Corresponding_CDS_history | C15H11.3a:wp267 | ||||||||
| Corresponding_transcript | C15H11.3.1 | ||||||||
| Other_sequence | CBC01576_1 | ||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00040618 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00028925 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092211 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063059 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092212 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010797 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092210 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00066418 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9013 | ||||||||
| Expr14870 | |||||||||
| Expr14871 | |||||||||
| Expr14872 | |||||||||
| Expr14873 | |||||||||
| Expr1027360 | |||||||||
| Expr1031807 | |||||||||
| Expr1144676 | |||||||||
| Expr2014534 | |||||||||
| Expr2032773 | |||||||||
| Drives_construct | WBCnstr00035845 | ||||||||
| WBCnstr00041566 | |||||||||
| Construct_product | WBCnstr00035845 | ||||||||
| WBCnstr00041566 | |||||||||
| Antibody | WBAntibody00002133 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (102) | |||||||||
| Interaction (97) | |||||||||
| Map_info | Map | V | Position | 6.28588 | Error | 0.001447 | |||
| Positive | Positive_clone | C15H11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4552 | |||||||
| 4553 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (20) | |||||||||
| Remark | Sequence connection from [source BK Felber] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Please note that this publication erroneously cited nfx-1. The correct gene is nxf-1 | Paper_evidence | WBPaper00041879 | |||||||
| Method | Gene |
