WormBase Tree Display for Gene: WBGene00003835
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WBGene00003835 | SMap | S_parent | Sequence | C15H11 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nxf | ||||||
Allele (39) | |||||||
Strain | WBStrain00031518 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00102819 | ||||||
00102820 | |||||||
00102821 | |||||||
00102822 | |||||||
00102823 | |||||||
00102824 | |||||||
00102825 | |||||||
00102826 | |||||||
00102827 | |||||||
Ortholog (47) | |||||||
Paralog | WBGene00003834 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
Structured_description | Concise_description | nxf-2 encodes a predicted homolog of human TAP protein, a member of the NXF family of shuttling transport receptors for nuclear export of mRNA, and it affects embryonic viability. | Paper_evidence | WBPaper00004473 | |||
WBPaper00004540 | |||||||
Curator_confirmed | WBPerson48 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be located in nucleus. Expressed in germ cell. Is an ortholog of several human genes including NXF1 (nuclear RNA export factor 1); NXF2 (nuclear RNA export factor 2); and NXF3 (nuclear RNA export factor 3). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C15H11.6 | |||||
Corresponding_CDS_history | C15H11.6:wp114 | ||||||
Corresponding_transcript | C15H11.6.1 | ||||||
Other_sequence | JI167486.1 | ||||||
CR01563 | |||||||
JI168580.1 | |||||||
CRC03676_1 | |||||||
JI171544.1 | |||||||
Associated_feature | WBsf653381 | ||||||
WBsf234940 | |||||||
WBsf234941 | |||||||
WBsf234942 | |||||||
WBsf234943 | |||||||
Experimental_info | RNAi_result | WBRNAi00010798 | Inferred_automatically | RNAi_primary | |||
WBRNAi00092209 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00040621 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00007826 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00028926 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr11968 | ||||||
Expr16240 | |||||||
Expr16241 | |||||||
Expr1023865 | |||||||
Expr1031808 | |||||||
Expr1144679 | |||||||
Expr2014535 | |||||||
Expr2032774 | |||||||
Drives_construct | WBCnstr00035844 | ||||||
WBCnstr00042853 | |||||||
WBCnstr00042854 | |||||||
Construct_product | WBCnstr00019837 | ||||||
WBCnstr00035844 | |||||||
WBCnstr00042854 | |||||||
Microarray_results (18) | |||||||
Expression_cluster (124) | |||||||
Interaction (282) | |||||||
Map_info | Map | V | Position | 6.29176 | Error | 0.002671 | |
Positive | Positive_clone | C15H11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4552 | |||||
4553 | |||||||
5277 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00004473 | ||||||
WBPaper00004540 | |||||||
WBPaper00012528 | |||||||
WBPaper00013477 | |||||||
WBPaper00024231 | |||||||
WBPaper00038491 | |||||||
WBPaper00040491 | |||||||
WBPaper00041879 | |||||||
WBPaper00055090 | |||||||
WBPaper00064359 | |||||||
Remark | Sequence connection from [source BK Felber] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Please note that this publication erreneously cited nfx-2. The correct gene is nxf-2. | Paper_evidence | WBPaper00041879 | |||||
Method | Gene |