WormBase Tree Display for Gene: WBGene00003835

WBGene00003835 SMap: S_parent: Sequence: C15H11
  Identity: Version: 1
    Name: CGC_name: nxf-2
      Sequence_name: C15H11.6
      Molecular_name: C15H11.6
        C15H11.6.1
        CE36102
      Other_name: nfx-2 Paper_evidence: WBPaper00041879
        CELE_C15H11.6 Accession_evidence: NDB BX284605
      Public_name: nxf-2
    DB_info: Database: AceView gene 5O896
        WormQTL gene WBGene00003835
        WormFlux gene WBGene00003835
        NDB locus_tag CELE_C15H11.6
        Panther gene CAEEL|WormBase=WBGene00003835|UniProtKB=Q9XVS8
          family PTHR10662
        NCBI gene 179938
        RefSeq protein NM_074167.8
        SwissProt UniProtAcc Q9XVS8
        TREEFAM TREEFAM_ID TF314566
        UniProt_GCRP UniProtAcc Q9XVS8
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:33 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nxf
    Allele (39)
    Strain: WBStrain00031518
    RNASeq_FPKM (74)
    GO_annotation: 00102819
      00102820
      00102821
      00102822
      00102823
      00102824
      00102825
      00102826
      00102827
    Ortholog (47)
    Paralog: WBGene00003834 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: nxf-2 encodes a predicted homolog of human TAP protein, a member of the NXF family of shuttling transport receptors for nuclear export of mRNA, and it affects embryonic viability. Paper_evidence: WBPaper00004473
            WBPaper00004540
          Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable RNA binding activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be located in nucleus. Expressed in germ cell. Is an ortholog of several human genes including NXF1 (nuclear RNA export factor 1); NXF2 (nuclear RNA export factor 2); and NXF3 (nuclear RNA export factor 3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C15H11.6
    Corresponding_CDS_history: C15H11.6:wp114
    Corresponding_transcript: C15H11.6.1
    Other_sequence: JI167486.1
      CR01563
      JI168580.1
      CRC03676_1
      JI171544.1
    Associated_feature: WBsf653381
      WBsf234940
      WBsf234941
      WBsf234942
      WBsf234943
  Experimental_info: RNAi_result: WBRNAi00010798 Inferred_automatically: RNAi_primary
      WBRNAi00092209 Inferred_automatically: RNAi_primary
      WBRNAi00040621 Inferred_automatically: RNAi_primary
      WBRNAi00007826 Inferred_automatically: RNAi_primary
      WBRNAi00028926 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr11968
      Expr16240
      Expr16241
      Expr1023865
      Expr1031808
      Expr1144679
      Expr2014535
      Expr2032774
    Drives_construct: WBCnstr00035844
      WBCnstr00042853
      WBCnstr00042854
    Construct_product: WBCnstr00019837
      WBCnstr00035844
      WBCnstr00042854
    Microarray_results (18)
    Expression_cluster (124)
    Interaction: WBInteraction000106214
      WBInteraction000106657
      WBInteraction000110314
      WBInteraction000110561
      WBInteraction000114247
      WBInteraction000118140
      WBInteraction000119305
      WBInteraction000119896
      WBInteraction000120696
      WBInteraction000125031
      WBInteraction000125179
      WBInteraction000125381
      WBInteraction000125382
      WBInteraction000125660
      WBInteraction000127121
      WBInteraction000127409
      WBInteraction000128638
      WBInteraction000128639
      WBInteraction000128640
      WBInteraction000128641
      WBInteraction000128642
      WBInteraction000128643
      WBInteraction000128644
      WBInteraction000135591
      WBInteraction000136338
      WBInteraction000137033
      WBInteraction000137249
      WBInteraction000137986
      WBInteraction000139189
      WBInteraction000142441
      WBInteraction000144747
      WBInteraction000145110
      WBInteraction000145679
      WBInteraction000147138
      WBInteraction000151450
      WBInteraction000154249
      WBInteraction000154250
      WBInteraction000154251
      WBInteraction000154252
      WBInteraction000154253
      WBInteraction000154254
      WBInteraction000154255
      WBInteraction000154256
      WBInteraction000154257
      WBInteraction000154258
      WBInteraction000154259
      WBInteraction000154260
      WBInteraction000154261
      WBInteraction000154262
      WBInteraction000154263
      WBInteraction000154264
      WBInteraction000154265
      WBInteraction000156525
      WBInteraction000158548
      WBInteraction000158549
      WBInteraction000159576
      WBInteraction000160636
      WBInteraction000161469
      WBInteraction000162437
      WBInteraction000163782
      WBInteraction000164619
      WBInteraction000165184
      WBInteraction000166686
      WBInteraction000166838
      WBInteraction000167410
      WBInteraction000167418
      WBInteraction000167419
      WBInteraction000168595
      WBInteraction000173589
      WBInteraction000184493
      WBInteraction000188500
      WBInteraction000188823
      WBInteraction000194841
      WBInteraction000195395
      WBInteraction000195485
      WBInteraction000196424
      WBInteraction000196867
      WBInteraction000198920
      WBInteraction000200016
      WBInteraction000200340
      WBInteraction000203545
      WBInteraction000205171
      WBInteraction000206685
      WBInteraction000207545
      WBInteraction000207952
      WBInteraction000208138
      WBInteraction000210769
      WBInteraction000211076
      WBInteraction000211308
      WBInteraction000213519
      WBInteraction000215084
      WBInteraction000216666
      WBInteraction000216833
      WBInteraction000217286
      WBInteraction000219271
      WBInteraction000219324
      WBInteraction000219489
      WBInteraction000219613
      WBInteraction000220227
      WBInteraction000220304
      WBInteraction000222882
      WBInteraction000226283
      WBInteraction000226808
      WBInteraction000228374
      WBInteraction000229145
      WBInteraction000229539
      WBInteraction000229686
      WBInteraction000229752
      WBInteraction000229891
      WBInteraction000229959
      WBInteraction000230099
      WBInteraction000230182
      WBInteraction000231712
      WBInteraction000235125
      WBInteraction000236787
      WBInteraction000237102
      WBInteraction000237469
      WBInteraction000237958
      WBInteraction000238328
      WBInteraction000238653
      WBInteraction000239091
      WBInteraction000241318
      WBInteraction000242171
      WBInteraction000242247
      WBInteraction000244474
      WBInteraction000244612
      WBInteraction000244671
      WBInteraction000248793
      WBInteraction000251162
      WBInteraction000252525
      WBInteraction000252899
      WBInteraction000253641
      WBInteraction000253965
      WBInteraction000254451
      WBInteraction000255028
      WBInteraction000255745
      WBInteraction000255819
      WBInteraction000257003
      WBInteraction000257308
      WBInteraction000261320
      WBInteraction000261726
      WBInteraction000261949
      WBInteraction000262504
      WBInteraction000265017
      WBInteraction000265830
      WBInteraction000265922
      WBInteraction000266512
      WBInteraction000268551
      WBInteraction000269473
      WBInteraction000274078
      WBInteraction000274392
      WBInteraction000274489
      WBInteraction000275349
      WBInteraction000276380
      WBInteraction000276871
      WBInteraction000276911
      WBInteraction000277128
      WBInteraction000277742
      WBInteraction000278150
      WBInteraction000278782
      WBInteraction000281986
      WBInteraction000282265
      WBInteraction000282543
      WBInteraction000284428
      WBInteraction000284730
      WBInteraction000284818
      WBInteraction000286674
      WBInteraction000287265
      WBInteraction000287390
      WBInteraction000287655
      WBInteraction000288038
      WBInteraction000289952
      WBInteraction000290278
      WBInteraction000290986
      WBInteraction000294530
      WBInteraction000295097
      WBInteraction000295479
      WBInteraction000296267
      WBInteraction000296972
      WBInteraction000298606
      WBInteraction000301950
      WBInteraction000302426
      WBInteraction000302611
      WBInteraction000303088
      WBInteraction000303554
      WBInteraction000304087
      WBInteraction000304734
      WBInteraction000305414
      WBInteraction000305540
      WBInteraction000306523
      WBInteraction000307667
      WBInteraction000307916
      WBInteraction000309596
      WBInteraction000311050
      WBInteraction000314851
      WBInteraction000317872
      WBInteraction000318767
      WBInteraction000320632
      WBInteraction000321762
      WBInteraction000322281
      WBInteraction000323104
      WBInteraction000323510
      WBInteraction000323878
      WBInteraction000324798
      WBInteraction000327712
      WBInteraction000328549
      WBInteraction000329452
      WBInteraction000330700
      WBInteraction000331566
      WBInteraction000332763
      WBInteraction000333190
      WBInteraction000334946
      WBInteraction000335482
      WBInteraction000338814
      WBInteraction000339546
      WBInteraction000339743
      WBInteraction000346708
      WBInteraction000346928
      WBInteraction000348249
      WBInteraction000352248
      WBInteraction000354250
      WBInteraction000354468
      WBInteraction000354800
      WBInteraction000356274
      WBInteraction000359612
      WBInteraction000360097
      WBInteraction000361867
      WBInteraction000370510
      WBInteraction000370702
      WBInteraction000376838
      WBInteraction000377938
      WBInteraction000379763
      WBInteraction000381048
      WBInteraction000387447
      WBInteraction000388391
      WBInteraction000389014
      WBInteraction000389417
      WBInteraction000391810
      WBInteraction000394334
      WBInteraction000395615
      WBInteraction000396614
      WBInteraction000398360
      WBInteraction000401797
      WBInteraction000402561
      WBInteraction000402664
      WBInteraction000405038
      WBInteraction000409095
      WBInteraction000409389
      WBInteraction000411996
      WBInteraction000415039
      WBInteraction000415793
      WBInteraction000416167
      WBInteraction000416548
      WBInteraction000418468
      WBInteraction000419108
      WBInteraction000419620
      WBInteraction000424150
      WBInteraction000424687
      WBInteraction000430861
      WBInteraction000431768
      WBInteraction000432394
      WBInteraction000434618
      WBInteraction000440996
      WBInteraction000442978
      WBInteraction000446091
      WBInteraction000454730
      WBInteraction000455660
      WBInteraction000457808
      WBInteraction000458390
      WBInteraction000458750
      WBInteraction000458776
      WBInteraction000459315
      WBInteraction000461913
      WBInteraction000523037
      WBInteraction000541034
      WBInteraction000547268
      WBInteraction000547269
      WBInteraction000555930
      WBInteraction000555931
      WBInteraction000555932
      WBInteraction000556360
      WBInteraction000556361
  Map_info: Map: V Position: 6.29176 Error: 0.002671
    Positive: Positive_clone: C15H11 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4552
        4553
        5277
    Pseudo_map_position
  Reference: WBPaper00004473
    WBPaper00004540
    WBPaper00012528
    WBPaper00013477
    WBPaper00024231
    WBPaper00038491
    WBPaper00040491
    WBPaper00041879
    WBPaper00055090
    WBPaper00064359
  Remark: Sequence connection from [source BK Felber]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    Please note that this publication erreneously cited nfx-2. The correct gene is nxf-2. Paper_evidence: WBPaper00041879
  Method: Gene