WormBase Tree Display for Gene: WBGene00003822
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WBGene00003822 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 4 | |||||||
Name | CGC_name | nsy-1 | Person_evidence | WBPerson42 | |||||
Sequence_name | F59A6.1 | ||||||||
Molecular_name | F59A6.1a | ||||||||
F59A6.1a.1 | |||||||||
CE44901 | |||||||||
F59A6.1b | |||||||||
CE50862 | |||||||||
F59A6.1b.1 | |||||||||
Other_name | esp-8 | ||||||||
ask-1 | |||||||||
xts-1 | Person_evidence | WBPerson9709 | |||||||
srf-6 | |||||||||
CELE_F59A6.1 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | nsy-1 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 25 Oct 2016 10:44:04 | WBPerson2970 | Name_change | Other_name | xts-1 | ||||
3 | 02 Mar 2018 10:40:21 | WBPerson4025 | Event | Split_into | WBGene00303064 | ||||
4 | 02 Aug 2019 15:22:42 | WBPerson1983 | Name_change | Other_name | srf-6 | ||||
Split_into | WBGene00303064 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nsy | ||||||||
Allele (121) | |||||||||
Legacy_information | ky400 homozygotes lose neuronal asymmetry, express str-2::GFPin both AWC neurons. ky542, ky397 similar.All 3 probable nulls: stop codons in F59A6.1, encoding homolog of Human MAPKKK ASK1. | ||||||||
Strain (11) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (59) | |||||||||
Ortholog (51) | |||||||||
Paralog | WBGene00004161 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
Structured_description | Concise_description | nsy-1 encodes a MAP kinase kinase kinase (MAP3K) that is orthologous to the mammalian apoptosis signal-regulating kinase (ASK) family of protein kinases; nsy-1 activity is required for chemotaxis, egg laying, pathogen response, and response to anoxia; NSY-1 activity is activated by the calmodulin kinase UNC-43, and is required for lateral signalling that leads to asymmetric olfactory neuron fates; NSY-1 interacts with SEK-1, and is expressed in the intestine, hypodermis, rectal gland cells, and neurons. | Paper_evidence | WBPaper00003760 | |||||
WBPaper00004610 | |||||||||
WBPaper00004669 | |||||||||
WBPaper00005370 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
WBPerson1843 | |||||||||
Date_last_updated | 11 Jan 2011 00:00:00 | ||||||||
Automated_description | Enables MAP kinase kinase kinase activity; mitogen-activated protein kinase kinase binding activity; and protein serine/threonine/tyrosine kinase activity. Involved in several processes, including defense response to other organism; determination of adult lifespan; and positive regulation of macromolecule biosynthetic process. Located in axon cytoplasm; neuronal cell body; and postsynaptic density. Expressed in head; rectal gland cell; and tail. Used to study amphetamine abuse. Human ortholog(s) of this gene implicated in Huntington's disease and perinatal necrotizing enterocolitis. Is an ortholog of human MAP3K5 (mitogen-activated protein kinase kinase kinase 5). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Experimental_model | DOID:670 | Homo sapiens | Paper_evidence | WBPaper00038418 | ||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 31 May 2019 00:00:00 | ||||||||
Potential_model | DOID:12858 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6857) | |||||
DOID:8677 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6857) | ||||||
Models_disease_asserted | WBDOannot00000693 | ||||||||
Molecular_info | Corresponding_CDS | F59A6.1a | |||||||
F59A6.1b | |||||||||
Corresponding_CDS_history | F59A6.1c:wp264 | ||||||||
Corresponding_transcript | F59A6.1a.1 | ||||||||
F59A6.1b.1 | |||||||||
Other_sequence (29) | |||||||||
Associated_feature | WBsf657564 | ||||||||
WBsf987777 | |||||||||
WBsf987778 | |||||||||
WBsf987779 | |||||||||
WBsf987780 | |||||||||
WBsf1012168 | |||||||||
WBsf1012169 | |||||||||
WBsf221219 | |||||||||
Experimental_info (11) | |||||||||
Map_info | Map | II | Position | -2.59263 | Error | 0.001611 | |||
Positive | Inside_rearr | ccDf2 | |||||||
maDf4 | |||||||||
Positive_clone | F59A6 | Author_evidence | Sagasti A | ||||||
Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
Negative | Outside_rearr | ccDf11 | |||||||
Mapping_data | Pos_neg_data | 10652 | |||||||
10653 | |||||||||
10654 | |||||||||
10655 | |||||||||
Reference (158) | |||||||||
Picture | WBPicture0000013079 | ||||||||
WBPicture0000013081 | |||||||||
WBPicture0000013093 | |||||||||
Remark | Sequence connection (nsy-1 = F59A6.1) from Sagasti A and Bargmann C [030204 ck1] | ||||||||
Method | Gene |