WormBase Tree Display for Gene: WBGene00004161

WBGene00004161 SMap: S_parent: Sequence: Y111B2A
  Identity: Version: 1
    Name: CGC_name: pqn-80 Person_evidence: WBPerson625
      Sequence_name: Y111B2A.14
      Molecular_name (59)
      Other_name: Y111B2G.d Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        Y111B2G.e Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y111B2A.14 Accession_evidence: NDB BX284603
      Public_name: pqn-80
    DB_info: Database: AceView gene 3N739
        WormQTL gene WBGene00004161
        WormFlux gene WBGene00004161
        NDB locus_tag CELE_Y111B2A.14
        Panther gene CAEEL|WormBase=Y111B2A.14c|UniProtKB=A0A0K3AX73
          family PTHR23189
        NCBI gene 176683
        RefSeq protein (19)
        TREEFAM TREEFAM_ID TF343498
        TrEMBL UniProtAcc (19)
        UniProt_GCRP UniProtAcc A0A0K3AX73
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:34 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pqn
    Allele (658)
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP3766
    Ortholog (17)
    Paralog: WBGene00001081 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00003822 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). Paper_evidence: WBPaper00005068
            WBPaper00012788
            WBPaper00012830
            WBPaper00012882
            WBPaper00012897
            WBPaper00013003
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in ABalppppppa; ABpraaapppa; and body wall muscle cell based on tiling array and single-cell RNA-seq studies. Is affected by several genes including skn-1; sir-2.1; and lin-39 based on microarray; RNA-seq; and proteomic studies. Is affected by eleven chemicals including rotenone; D-glucose; and metformin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: HPC2 and ubinuclein domain and Hpc2-related domain. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS (19)
    Corresponding_CDS_history: Y111B2A.14:wp59
      Y111B2A.14:wp200
      Y111B2A.14:wp206
    Corresponding_transcript (21)
    Other_sequence (17)
    Associated_feature (20)
  Experimental_info: RNAi_result: WBRNAi00055343 Inferred_automatically: RNAi_primary
      WBRNAi00085523 Inferred_automatically: RNAi_primary
      WBRNAi00064389 Inferred_automatically: RNAi_primary
      WBRNAi00036570 Inferred_automatically: RNAi_primary
      WBRNAi00026588 Inferred_automatically: RNAi_primary
      WBRNAi00055342 Inferred_automatically: RNAi_primary
      WBRNAi00055344 Inferred_automatically: RNAi_primary
      WBRNAi00007291 Inferred_automatically: RNAi_primary
      WBRNAi00009284 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1019536
      Expr1032028
      Expr1158876
      Expr2015073
      Expr2033309
    Microarray_results (24)
    Expression_cluster (62)
    SAGE_tag (23)
    Interaction: WBInteraction000502475
      WBInteraction000575247
  Map_info: Map: III Position: 18.0442 Error: 0.017944
    Positive: Positive_clone: Y111B2A Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00037357
    WBPaper00055090
    WBPaper00057644
    WBPaper00059739
    WBPaper00065394
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene