WormBase Tree Display for Gene: WBGene00003802
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| WBGene00003802 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y56A3A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | npp-16 | Person_evidence | WBPerson1780 | |||||
| Sequence_name | Y56A3A.17 | ||||||||
| Molecular_name | Y56A3A.17 | ||||||||
| Y56A3A.17.1 | |||||||||
| CE22585 | |||||||||
| Other_name | CeNup50 | Person_evidence | WBPerson1780 | ||||||
| CELE_Y56A3A.17 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | npp-16 | ||||||||
| DB_info | Database | AceView | gene | 3N7 | |||||
| WormQTL | gene | WBGene00003802 | |||||||
| WormFlux | gene | WBGene00003802 | |||||||
| NDB | locus_tag | CELE_Y56A3A.17 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003802|UniProtKB=Q7K6X4 | |||||||
| family | PTHR23138 | ||||||||
| NCBI | gene | 176623 | |||||||
| RefSeq | protein | NM_067150.3 | |||||||
| SwissProt | UniProtAcc | Q7K6X4 | |||||||
| UniProt_GCRP | UniProtAcc | Q7K6X4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | npp | ||||||||
| Allele (59) | |||||||||
| Strain | WBStrain00032230 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00082344 | ||||||||
| 00082345 | |||||||||
| 00082346 | |||||||||
| 00082347 | |||||||||
| 00082348 | |||||||||
| 00082349 | |||||||||
| 00082350 | |||||||||
| 00082351 | |||||||||
| 00082352 | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00003795 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00004054 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| WBGene00077670 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| WBGene00077603 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| WBGene00045202 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| WBGene00004306 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Predicted to be involved in protein import into nucleus. Predicted to be located in nuclear membrane. Predicted to be part of nuclear pore. Is an ortholog of human NUP50 (nucleoporin 50). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y56A3A.17 | |||||||
| Corresponding_CDS_history | Y56A3A.17a:wp268 | ||||||||
| Corresponding_transcript | Y56A3A.17.1 | ||||||||
| Other_sequence (49) | |||||||||
| Associated_feature | WBsf645644 | ||||||||
| WBsf225870 | |||||||||
| WBsf225871 | |||||||||
| WBsf225872 | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr1019030 | ||||||||
| Expr1031788 | |||||||||
| Expr1161004 | |||||||||
| Expr2014376 | |||||||||
| Expr2032617 | |||||||||
| Microarray_results (34) | |||||||||
| Expression_cluster (124) | |||||||||
| Interaction (12) | |||||||||
| Map_info | Map | III | Position | 13.3871 | Error | 0.025155 | |||
| Positive | Positive_clone | Y56A3A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5020 | |||||||
| 4180 | |||||||||
| 5445 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006202 | ||||||||
| WBPaper00026593 | |||||||||
| WBPaper00032108 | |||||||||
| WBPaper00033774 | |||||||||
| WBPaper00035574 | |||||||||
| WBPaper00037568 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00038705 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065742 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
