WormBase Tree Display for Gene: WBGene00004054
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| WBGene00004054 | SMap | S_parent | Sequence | AC8 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | Sequence_name | AC8.1 | ||||||||
| Molecular_name | AC8.1 | |||||||||
| Other_name | pme-6ps | |||||||||
| pme-6 | ||||||||||
| CELE_AC8.1 | Accession_evidence | NDB | BX284606 | |||||||
| Public_name | AC8.1 | |||||||||
| DB_info | Database | AceView | gene | XA862 | ||||||
| WormQTL | gene | WBGene00004054 | ||||||||
| NDB | locus_tag | CELE_AC8.1 | ||||||||
| NCBI | gene | 181803 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
| 2 | 12 May 2006 09:49:36 | WBPerson1983 | Event | Changed_class | CDS | Pseudogene | ||||
| 3 | 04 Dec 2014 09:37:12 | WBPerson2970 | Name_change | Other_name | pme-6 | |||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Allele (157) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Paralog | WBGene00003802 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| WBGene00004049 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | |||||||
| Structured_description | Automated_description | Enriched in head mesodermal cell based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by four chemicals including Alovudine; allantoin; and Sirolimus based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | AC8.1:wp101 | ||||||||
| AC8.1:wp159 | ||||||||||
| Corresponding_pseudogene | AC8.1 | |||||||||
| Other_sequence (27) | ||||||||||
| Experimental_info | Microarray_results | SMD_AC8.1 | ||||||||
| SMD_AC8.2 | ||||||||||
| Aff_AC8.A | ||||||||||
| Aff_AC8.D | ||||||||||
| Expression_cluster (65) | ||||||||||
| Interaction | WBInteraction000539889 | |||||||||
| WBInteraction000539942 | ||||||||||
| WBInteraction000550902 | ||||||||||
| Map_info | Map | X | Position | -20.2295 | ||||||
| Positive | Positive_clone | AC8 | Inferred_automatically | From CDS info | ||||||
| From sequence, transcript, pseudogene data | ||||||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00005600 | |||||||||
| WBPaper00005736 | ||||||||||
| WBPaper00006357 | ||||||||||
| WBPaper00010156 | ||||||||||
| WBPaper00029208 | ||||||||||
| WBPaper00040131 | ||||||||||
| Remark | Gene information and sequence connection from Serge Desnoyers. krb [020430] | |||||||||
| Pseudogene tag removed because the corresponding sequence object for this gene has not been annotated as a pseudogene. This discrepancy may reflect that the sequence object was once a pseudogene and has subsequently been converted into a real gene (without this Locus object being updated). Alternatively it may be that this gene is a pseudogene in another C. elegans strain, but not in the sequenced N2 strain. [krb 030806] | ||||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||||
| Method | Gene |
