WormBase Tree Display for Gene: WBGene00003796
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| WBGene00003796 | SMap | S_parent | Sequence | ZK328 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | npp-10 | Person_evidence | WBPerson1780 | |||||
| Sequence_name | ZK328.5 | ||||||||
| Molecular_name | ZK328.5a | ||||||||
| ZK328.5a.1 | |||||||||
| CE44281 | |||||||||
| ZK328.5b | |||||||||
| CE44292 | |||||||||
| ZK328.5c | |||||||||
| CE44327 | |||||||||
| ZK328.5b.1 | |||||||||
| ZK328.5c.1 | |||||||||
| Other_name | Nup96 | Paper_evidence | WBPaper00026834 | ||||||
| Nup98 | Paper_evidence | WBPaper00026834 | |||||||
| CELE_ZK328.5 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | npp-10 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | npp | ||||||||
| Allele (84) | |||||||||
| Possibly_affected_by | WBVar02154080 | ||||||||
| Strain | WBStrain00035673 | ||||||||
| WBStrain00022364 | |||||||||
| WBStrain00055401 | |||||||||
| WBStrain00054175 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (51) | |||||||||
| Ortholog (43) | |||||||||
| Structured_description | Concise_description | npp-10 is orthologous to the human gene NUCLEOPORIN, 98-KD (NUP98; OMIM:601021), which can promote leukemias (myelodysplastic syndromes, AML, or CML) when chromosomally rearranged. | Curator_confirmed | WBPerson1823 | |||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables RNA binding activity. Involved in embryo development; organelle organization; and protein localization to organelle. Located in P granule; kinetochore; and nuclear envelope. Part of nuclear pore. Human ortholog(s) of this gene implicated in T-cell acute lymphoblastic leukemia. Is an ortholog of human NUP98 (nucleoporin 98 and 96 precursor). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:5603 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8068) | ||||
| Molecular_info | Corresponding_CDS | ZK328.5a | |||||||
| ZK328.5b | |||||||||
| ZK328.5c | |||||||||
| Corresponding_CDS_history | ZK328.5a:wp101 | ||||||||
| ZK328.5a:wp209 | |||||||||
| ZK328.5b:wp101 | |||||||||
| ZK328.5b:wp209 | |||||||||
| Corresponding_transcript | ZK328.5a.1 | ||||||||
| ZK328.5b.1 | |||||||||
| ZK328.5c.1 | |||||||||
| Other_sequence (19) | |||||||||
| Associated_feature | WBsf655439 | ||||||||
| WBsf666428 | |||||||||
| WBsf666948 | |||||||||
| WBsf666949 | |||||||||
| WBsf226748 | |||||||||
| WBsf226749 | |||||||||
| WBsf226750 | |||||||||
| WBsf226751 | |||||||||
| Experimental_info | RNAi_result (21) | ||||||||
| Expr_pattern | Expr9020 | ||||||||
| Expr9024 | |||||||||
| Expr1026045 | |||||||||
| Expr1031782 | |||||||||
| Expr1162768 | |||||||||
| Expr2014370 | |||||||||
| Expr2032611 | |||||||||
| Drives_construct | WBCnstr00035863 | ||||||||
| WBCnstr00042404 | |||||||||
| Construct_product | WBCnstr00006025 | ||||||||
| WBCnstr00013677 | |||||||||
| WBCnstr00035863 | |||||||||
| WBCnstr00042404 | |||||||||
| Antibody | WBAntibody00001025 | ||||||||
| WBAntibody00001887 | |||||||||
| WBAntibody00001888 | |||||||||
| WBAntibody00001893 | |||||||||
| WBAntibody00002138 | |||||||||
| WBAntibody00002139 | |||||||||
| Microarray_results (32) | |||||||||
| Expression_cluster (141) | |||||||||
| Interaction (183) | |||||||||
| Map_info | Map | III | Position | -1.42704 | Error | 0.000206 | |||
| Positive | Positive_clone | ZK328 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4248 | |||||||
| 4546 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (19) | |||||||||
| Remark | Sequence connection from [Askjaer P, Mattaj IW]. krb 13/11/01 | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
