WormBase Tree Display for Gene: WBGene00003796

WBGene00003796 SMap: S_parent: Sequence: ZK328
  Identity: Version: 1
    Name: CGC_name: npp-10 Person_evidence: WBPerson1780
      Sequence_name: ZK328.5
      Molecular_name: ZK328.5a
        ZK328.5a.1
        CE44281
        ZK328.5b
        CE44292
        ZK328.5c
        CE44327
        ZK328.5b.1
        ZK328.5c.1
      Other_name: Nup96 Paper_evidence: WBPaper00026834
        Nup98 Paper_evidence: WBPaper00026834
        CELE_ZK328.5 Accession_evidence: NDB BX284603
      Public_name: npp-10
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:33 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: npp
    Allele (84)
    Possibly_affected_by: WBVar02154080
    Strain: WBStrain00035673
      WBStrain00022364
      WBStrain00055401
      WBStrain00054175
    RNASeq_FPKM (74)
    GO_annotation (51)
    Ortholog: WBGene00055518 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00030693 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00143710 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00235019 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5368 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g608 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g11907 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g11909 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g13985 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g3180 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g23142 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g10040 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g4692 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g18732 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g435 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g18081 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00134.g5266 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00134.g5267 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_13368.g24197 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-npp-10 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold594.g5228 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00229.g7534 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_16481 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_010682 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g09632 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g11147 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30145300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g7844 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00122503 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00210454 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00210603 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00245308 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00107476 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00258906 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00285458 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000003060 Saccharomyces cerevisiae From_analysis: Hieranoid
            OMA
            OrthoFinder
            Panther
            SonicParanoid
      SGD:S000001551 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
      SGD:S000004650 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
      FB:FBgn0039120 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1180 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:8068 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:109404 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:71033 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Concise_description: npp-10 is orthologous to the human gene NUCLEOPORIN, 98-KD (NUP98; OMIM:601021), which can promote leukemias (myelodysplastic syndromes, AML, or CML) when chromosomally rearranged. Curator_confirmed: WBPerson1823
            WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enables RNA binding activity. Involved in embryo development; organelle organization; and protein localization to organelle. Located in P granule; kinetochore; and nuclear envelope. Part of nuclear pore. Human ortholog(s) of this gene implicated in T-cell acute lymphoblastic leukemia. Is an ortholog of human NUP98 (nucleoporin 98 and 96 precursor). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:5603 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:8068)
  Molecular_info: Corresponding_CDS: ZK328.5a
      ZK328.5b
      ZK328.5c
    Corresponding_CDS_history: ZK328.5a:wp101
      ZK328.5a:wp209
      ZK328.5b:wp101
      ZK328.5b:wp209
    Corresponding_transcript: ZK328.5a.1
      ZK328.5b.1
      ZK328.5c.1
    Other_sequence (19)
    Associated_feature: WBsf655439
      WBsf666428
      WBsf666948
      WBsf666949
      WBsf226748
      WBsf226749
      WBsf226750
      WBsf226751
  Experimental_info: RNAi_result (21)
    Expr_pattern: Expr9020
      Expr9024
      Expr1026045
      Expr1031782
      Expr1162768
      Expr2014370
      Expr2032611
    Drives_construct: WBCnstr00035863
      WBCnstr00042404
    Construct_product: WBCnstr00006025
      WBCnstr00013677
      WBCnstr00035863
      WBCnstr00042404
    Antibody: WBAntibody00001025
      WBAntibody00001887
      WBAntibody00001888
      WBAntibody00001893
      WBAntibody00002138
      WBAntibody00002139
    Microarray_results (32)
    Expression_cluster (141)
    Interaction (183)
  Map_info: Map: III Position: -1.42704 Error: 0.000206
    Positive: Positive_clone: ZK328 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4248
        4546
    Pseudo_map_position
  Reference (19)
  Remark: Sequence connection from [Askjaer P, Mattaj IW]. krb 13/11/01
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene