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WormBase Tree Display for Gene: WBGene00003686

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Name Class

WBGene00003686SMapS_parentSequenceF44C8
IdentityVersion1
NameCGC_namenhr-96Person_evidenceWBPerson600
Sequence_nameF44C8.11
Molecular_nameF44C8.11
F44C8.11.1
CE35309
Other_nameCELE_F44C8.11Accession_evidenceNDBBX284605
Public_namenhr-96
DB_infoDatabaseAceViewgene5C713
WormQTLgeneWBGene00003686
WormFluxgeneWBGene00003686
NDBlocus_tagCELE_F44C8.11
PanthergeneCAEEL|WormBase=WBGene00003686|UniProtKB=Q95X91
familyPTHR45680
NCBIgene178703
RefSeqproteinNM_071210.5
SwissProtUniProtAccQ95X91
UniProt_GCRPUniProtAccQ95X91
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:32WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
Allele (33)
StrainWBStrain00036511
RNASeq_FPKM (74)
GO_annotation00088828
00088829
00088830
00088831
00111541
00111542
00111543
00111544
Contained_in_operonCEOP5028
Ortholog (36)
Paralog (217)
Structured_descriptionConcise_descriptionnhr-96 encodes a member of the superfamily of nuclear receptors, which is one of the most abundant class of transcriptional regulators; nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain.Paper_evidenceWBPaper00003416
Person_evidenceWBPerson600
Curator_confirmedWBPerson324
Date_last_updated21 Nov 2005 00:00:00
Automated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF44C8.11
Corresponding_CDS_historyF44C8.11:wp107
Corresponding_transcriptF44C8.11.1
Associated_featureWBsf978762
WBsf231490
Transcription_factorWBTranscriptionFactor000467
Experimental_infoRNAi_resultWBRNAi00047264Inferred_automaticallyRNAi_primary
WBRNAi00032225Inferred_automaticallyRNAi_primary
WBRNAi00047263Inferred_automaticallyRNAi_primary
WBRNAi00014915Inferred_automaticallyRNAi_primary
Expr_patternExpr1026829
Expr1151119
Expr2014248
Expr2032489
Drives_constructWBCnstr00035947
Construct_productWBCnstr00035947
Microarray_results (18)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00044246:pgrn-1_ced-3_downregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00046338:intestine_unique
WBPaper00048988:neuron_expressed
WBPaper00049942:HeatShock_downregulated_hsf-1(+)
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050163:chd-3(eh4)_downregulated_24-cell-embryo
WBPaper00050344:ASER-neuron_enriched
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:intestine_expressed
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053810:clk-1(qm30)_upregulated
WBPaper00053810:isp-1(qm150)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056826:SGP_biased
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057041:unc-70(cas983)_downregulated
WBPaper00057288:iff-1(RNAi)_upregulated_transcript
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058711:paraquat_downregulated
WBPaper00058948:PA14_downregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061274:hypergravity_15xg_downregulated
WBPaper00061527:nhr-18-C34D1.4_6256
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062440:crh-1(n3315)_downregulated
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
WBPaper00064716:paraquat_downregulated
WBPaper00065158:AFD_enriched
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00026980:intestine_enriched
WBPaper00030839:Embryo_Pan_Neuronal
WBPaper00031252:AIN-2_IP_enriched
WBPaper00032165:differentially_expressed_with_age_medoid_2
WBPaper00032948:StarveUp2
WBPaper00035588:alg-1(-)_upregulated
WBPaper00040858:eQTL_regulated_reproductive
WBPaper00041370:spg-7(RNAi)_upregulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00057098:SiO2-nanoparticles_upregulated
InteractionWBInteraction000031396
WBInteraction000216882
WBInteraction000454010
Map_infoMapVPosition-15.1923Error0.005154
PositivePositive_cloneF44C8Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00027309
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene